PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g08980.4 | ||||||||
Common Name | LR48_Vigan09g102300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 238aa MW: 25970.5 Da PI: 6.5084 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.5 | 2.2e-11 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQkYRl Vang06g08980.4 1 MRTMNVKGLTLYHLKSHLQKYRL 23 689*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 3.0E-13 | 64 | 109 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MRTMNVKGLT LYHLKSHLQK YRLGKQSGKD SDEGCKDGSY LQESPGTDNS SPKLPTSDAN 60 EGHEVKEALR AQMEVQSKLH LLVEAEKHLQ IRQDAERRYM GMLERACKML ADQFIGDIIM 120 DTDGQKFQGL ESKTPRSSLV DHVGFFPPVC SEVGGMHVSE VPPILQPQGA DCSTESCLTS 180 LESLGGLTLE GSPGGSKKRM LSLDSMVAPL IWSEANTRTQ GIHLAQVNPP GITRYGM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g08980.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511136.1 | 1e-175 | protein PHR1-LIKE 2 isoform X4 | ||||
Refseq | XP_017437289.1 | 1e-175 | PREDICTED: protein PHR1-LIKE 2-like isoform X2 | ||||
TrEMBL | A0A0L9VCI2 | 1e-175 | A0A0L9VCI2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144235.1 | 1e-165 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 3e-35 | G2-like family protein |
Publications ? help Back to Top | |||
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