PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g08980.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 266aa MW: 29015.1 Da PI: 6.5071 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.3 | 2.5e-11 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQkYRl Vang06g08980.3 1 MRTMNVKGLTLYHLKSHLQKYRL 23 689*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 3.6E-13 | 92 | 137 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MRTMNVKGLT LYHLKSHLQK YRLGKQSGKD SDEGCKDGSN NVYIISFCIG LNLVSFIEKP 60 MQGMSGSYLQ ESPGTDNSSP KLPTSDANEG HEVKEALRAQ MEVQSKLHLL VEAEKHLQIR 120 QDAERRYMGM LERACKMLAD QFIGDIIMDT DGQKFQGLES KTPRSSLVDH VGFFPPVCSE 180 VGGMHVSEVP PILQPQGADC STESCLTSLE SLGGLTLEGS PGGSKKRMLS LDSMVAPLIW 240 SEANTRTQGI HLAQVNPPGI TRYGM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g08980.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511135.1 | 1e-171 | protein PHR1-LIKE 2 isoform X3 | ||||
Refseq | XP_017437288.1 | 1e-171 | PREDICTED: protein PHR1-LIKE 2-like isoform X1 | ||||
TrEMBL | A0A0S3SP85 | 1e-170 | A0A0S3SP85_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144235.1 | 1e-163 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 3e-32 | G2-like family protein |