PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g08980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 283aa MW: 30955.5 Da PI: 6.7107 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.2 | 2.7e-11 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQkYRl Vang06g08980.1 1 MRTMNVKGLTLYHLKSHLQKYRL 23 689*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-10 | 1 | 24 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MRTMNVKGLT LYHLKSHLQK YRLGKQSGKD SDEGCKDGSK SYTSNNVYII SFCIGLNLVS 60 FIEKPMQGMS GSYLQESPGT DNSSPKLPTS DANEGHEVKE ALRAQMEVQS KLHLLVEVNF 120 LLTITMVLQA EKHLQIRQDA ERRYMGMLER ACKMLADQFI GDIIMDTDGQ KFQGLESKTP 180 RSSLVDHVGF FPPVCSEVGG MHVSEVPPIL QPQGADCSTE SCLTSLESLG GLTLEGSPGG 240 SKKRMLSLDS MVAPLIWSEA NTRTQGIHLA QVNPPGITRY GM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g08980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022641086.1 | 1e-180 | protein PHR1-LIKE 2 isoform X1 | ||||
TrEMBL | A0A3Q0FBT7 | 1e-179 | A0A3Q0FBT7_VIGRR; protein PHR1-LIKE 2 isoform X1 | ||||
STRING | XP_007144235.1 | 1e-159 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.2 | 5e-29 | G2-like family protein |