PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang06g08910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 18664 Da PI: 9.2077 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00032 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Vang06g08910.1 52 YECKTCNRTFPSFQALGGHRASH 74 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 127 | 149 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Vang06g08910.1 127 HECSICGAEFTSGQALGGHMRRH 149 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.3E-13 | 51 | 76 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.63E-9 | 51 | 74 | No hit | No description |
SMART | SM00355 | 0.052 | 52 | 74 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 52 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.63E-9 | 122 | 149 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.3E-4 | 125 | 149 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.9E-13 | 126 | 151 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.868 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MANCLILLAQ GQSRESPKHV EEDVGMNYAK YSSRKFLEAA TLGSSRAGYY VYECKTCNRT 60 FPSFQALGGH RASHKKLKAI VPIPQEKKHQ HLLSSDEDDF QLKPNNKSPF SLQLGTKASL 120 YNKSKVHECS ICGAEFTSGQ ALGGHMRRHR APVAVENGDS NNGGSSDVVH * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang06g08910.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017409390.1 | 1e-112 | PREDICTED: zinc finger protein ZAT5 | ||||
Swissprot | Q681X4 | 1e-32 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A0L9TDV4 | 1e-110 | A0A0L9TDV4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144239.1 | 6e-97 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04390.1 | 8e-44 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|