PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g08880.1
Common NameLR48_Vigan588s000600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 463aa    MW: 51707.9 Da    PI: 7.1123
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g08880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.91.9e-53321591128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiy++ePwdL   +++k++++ewyfFs  dkky +g r nrat++gyWkatg+d++v+
  Vang06g08880.1  32 LAPGFRFHPTDEELVIYYLKRKVSGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVK 125
                     579**************************9.99**************75348899999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++++vglkktLvf++grap+g++t+Wvmheyrl
  Vang06g08880.1 126 H-DQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 159
                     *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-6126187IPR003441NAC domain
PROSITE profilePS5100558.50432186IPR003441NAC domain
PfamPF023651.1E-2734159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGRETVFLPA PPTTTTTIVN PVAAPAAPPT SLAPGFRFHP TDEELVIYYL KRKVSGKSFR  60
FDAISEVDIY RSEPWDLADK SRLKTRDQEW YFFSALDKKY GNGGRMNRAT NKGYWKATGN  120
DRPVKHDQRT VGLKKTLVFH SGRAPDGKRT NWVMHEYRLV DEELERAGTG SSQPQDAYVL  180
CRVFHKNNIG PPNGQRYAPF VEEEWDDASG MVPGAEPVHN GSIAHQPRVE GNNGVLFAEG  240
RNGVLQDTQS INKTPFDVNK LPIETQNLLA VCKRESMAEY PSPEKDDNNC KQVDEYPSPQ  300
TDNPKPFSLI YKRRRHNLNS NHSNVSGDSI RTGQDPCSST ITTAATTLPT TTAGAETTNS  360
APKKHFLSAL VEFSLQESLE SKESLALIKA PDFDAENLES SMSPSSAKFI KNLQNEIHKL  420
AVEKETMRFE MMSAQAMINI LQSRVDVLSK ENEDLKRMTQ NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-483118819170NAC domain-containing protein 19
3swm_B1e-483118819170NAC domain-containing protein 19
3swm_C1e-483118819170NAC domain-containing protein 19
3swm_D1e-483118819170NAC domain-containing protein 19
3swp_A1e-483118819170NAC domain-containing protein 19
3swp_B1e-483118819170NAC domain-containing protein 19
3swp_C1e-483118819170NAC domain-containing protein 19
3swp_D1e-483118819170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g08880.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409415.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9SQY01e-130NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A0L9TE350.0A0A0L9TE35_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SP610.0A0A0S3SP61_PHAAN; Uncharacterized protein
STRINGGLYMA20G33430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-102NAC domain containing protein 50
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  5. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  6. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]