PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g08390.1 | ||||||||
Common Name | LR48_Vigan02g209800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 682aa MW: 75024.6 Da PI: 8.1354 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 77 | 99 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 kC++C++ F ++ n++rHir+ H Vang06g08390.1 77 KCNKCSREFCSPINYRRHIRVqH 99 7*******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.328 | 76 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MPVAKLPASG TTGFTKTDDG NDSLDTIFRQ AIGKEPLLSF PRAGDSPVQW IQLLHALDQQ 60 ELPGWPLLSP VKVQLQKCNK CSREFCSPIN YRRHIRVQHR LKKLDKDSKK NRELLGAYWD 120 KLSIEEAKEV VSFKNVMLEE VPGSSILEAL TTLRKQGFSS LPQYYLRAGS ALLNIVQSRP 180 SSFPISSQEL FSILDDSSEK TFLVGSAVSM QRYVFDGEAG KIGLEQKNLV ACTSFLLEQK 240 LVKSWLADKD AEALRCQKLL VEEEEAAQKR KAEILERKRQ KKLRQKEHKA KEQIENDTET 300 KGNISSAGED VSPGEASLGT CDFDAHNPDI FADHSPPPPH VTSHCLDTND VIEKDTLAGY 360 DDCDTDQYIE RQTLPAHNRP GTVPGRWQGL PKSQWARANG LNAGQNSQLT KLGVIQKHRT 420 SHDLRVAPII NGSKVWSRKP KAESNDLVVK NKLLKEPDKV KNHEVLIGSV SVSLGNSCHS 480 RGNFMAPQRD CSAAGNLSKL NTAQEKPGSN GRLTAKFWRP VSQHGTKDPF PLQNGGTEAD 540 AINGKIDENS SGQSSLRLCS VEGNDDIDFG DNFSHNVAKV DTESLRLSSH AAESFLAQRW 600 KEAISSDHVK LVFTPDSEPR GGQSVQDCEL AADASDADRC GVLASTENLL PATSGVARSK 660 PKTKPEKGMK IKYIPKQKTA A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 275 | 282 | ERKRQKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g08390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017415502.1 | 0.0 | PREDICTED: uncharacterized protein LOC108326484 | ||||
TrEMBL | A0A0L9TZF5 | 0.0 | A0A0L9TZF5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SN59 | 0.0 | A0A0S3SN59_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143440.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4517 | 27 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 1e-145 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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