PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g08190.1 | ||||||||
Common Name | LR48_Vigan02g196700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 152aa MW: 16824.9 Da PI: 6.7824 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.8 | 2e-16 | 33 | 75 | 3 | 49 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a++ Vang06g08190.1 33 YLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAIAYDLS 75 77******.**********865...5******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.0E-26 | 32 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.323 | 32 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-20 | 32 | 90 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-26 | 32 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.47E-26 | 33 | 88 | No hit | No description |
PRINTS | PR00367 | 5.8E-9 | 33 | 44 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-9 | 34 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-9 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MSETASTTKP MEDVPSLIYK NPIRRNSRRS TMYLGVRRRP WGRYAAEIRN PYTKERHWLG 60 TFDTAEEAAI AYDLSSINIS GINARTNFHY PFLSLPPPPI SLPPPPPPPT PELHQSVGVC 120 PEMNSAFDGD DESLVIASIL QSFSNSGNCS F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-16 | 33 | 88 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g08190.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413151.1 | 1e-108 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q8H3Q1 | 2e-27 | FZP_ORYSJ; Ethylene-responsive transcription factor FZP | ||||
TrEMBL | A0A0L9TZH2 | 1e-107 | A0A0L9TZH2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SNK5 | 1e-107 | A0A0S3SNK5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143615.1 | 9e-82 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14513 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 3e-30 | ERF family protein |