PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g08040.1 | ||||||||
Common Name | LR48_Vigan02g197600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 569aa MW: 64052.2 Da PI: 4.5163 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.2 | 6.6e-53 | 29 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrFhPtdeelv++yLk+k+ gk+l+l +vi+e+d+yk++P++Lp + +k+++++w+fF++rd+ky++g r+nrat++gyWkatgkd++v++ Vang06g08040.1 29 MPGFRFHPTDEELVMYYLKRKICGKRLKL-NVIRETDVYKWDPEELPgQsILKTGDRQWFFFCHRDRKYPNGARSNRATRHGYWKATGKDRNVIC 122 69***************************.99**************96446788999************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLvfy grap+g++tdWvmhey++ Vang06g08040.1 123 -NSRAVGVKKTLVFYIGRAPSGTRTDWVMHEYTM 155 .999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-60 | 24 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.075 | 28 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 30 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
LFGFCSRSRM GEASGDGSAD CFSQMMSSMP GFRFHPTDEE LVMYYLKRKI CGKRLKLNVI 60 RETDVYKWDP EELPGQSILK TGDRQWFFFC HRDRKYPNGA RSNRATRHGY WKATGKDRNV 120 ICNSRAVGVK KTLVFYIGRA PSGTRTDWVM HEYTMDEEEL KRCQGVKDYY ALYKVFKKSG 180 PGPKNGEQYG APFNEQEWAA DDDIVDFNNN ITDQEDPNVV PENGSALHPL LDDEINDIIR 240 EILDDELVLD QQHVNGYLDF PQVVTEETQS TVVDQFSEVL MYRETTDPSC QYFDVQPSFD 300 FNQPVTSHLQ VSEASEVSSA SNIQRKGLDL DKVGFLEIND LIDNDPALAN VENPVEYPHF 360 EDGLSELDLY QDAEMFLRDL GPIIHETDSH AYTNALVSNN IESQSYQLQS GSEDANQTVG 420 EFWMHDERNT LIPSEEGFVD SFSLSSPGVV CESLSFPTEG NYNQSSTVED VSTSSFSSSL 480 WAFVESIPTT PASAAESALV NRALNRMSSF SRVKIRHTNI TAGKDTATTK KAGRKGFSFL 540 FFPILIALCA FLWVFVGNLR SLGRCISP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-48 | 30 | 155 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 55 | KRKICGKRLK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g08040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF657305 | 0.0 | KF657305.1 Glycine max NAC transcription factor (SNAC38) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017415221.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
TrEMBL | A0A0L9TZ88 | 0.0 | A0A0L9TZ88_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SNG3 | 0.0 | A0A0S3SNG3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143604.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-120 | NAC domain containing protein 17 |
Publications ? help Back to Top | |||
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