PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g07140.1 | ||||||||
Common Name | LR48_Vigan02g191300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 95aa MW: 10571.1 Da PI: 4.1591 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 42.3 | 2.1e-13 | 1 | 40 | 61 | 100 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e Vang06g07140.1 1 MVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAE 40 69**********************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.7E-11 | 1 | 38 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 9.466 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MVYEANARIR DPVYGCAGAI CQLQKQVSEL QAQLAKAQAE VVNIQCQQAN LVALICMEMS 60 ETQEQHMVQP QPHIDMSCFI EDNSFGTAWE PLWT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g07140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-158 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414151.1 | 2e-65 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 6e-27 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0L9TYU2 | 4e-64 | A0A0L9TYU2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SNT9 | 4e-64 | A0A0S3SNT9_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA20G31780.1 | 5e-60 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF37341 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-22 | LOB domain-containing protein 1 |
Publications ? help Back to Top | |||
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