PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g06980.1 | ||||||||
Common Name | LR48_Vigan02g193000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 499aa MW: 55319.1 Da PI: 6.1316 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.1 | 8.3e-07 | 245 | 266 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Vang06g06980.1 245 FCTICGKGFKRDANLRMHMRGH 266 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.08E-5 | 242 | 269 | No hit | No description |
PROSITE profile | PS50157 | 12.03 | 244 | 271 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 244 | 266 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.4E-6 | 245 | 295 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 246 | 266 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 53 | 293 | 326 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 24 | 331 | 353 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MNPKGGLCAN NCKTSSEPPS FYGFGIESPF NEFNPPSLPI QSVLPGQSNT DVEIPDQENC 60 PLSDSSNTSK LQDWNPGAML NNLSFLEEKI HQLRDLVHLI VNKKCQPFGQ SHELVTQEQQ 120 LVTADLTSII VQLISTAGSL LPSVRHTLTT NPLVGQIDQL HGINLPFGSE PSTAINLQNN 180 SGNKLFDKST PNDLPNTCEM EQNYNMEEHE PKDEEDVDEG ESLPPGSYEI LQLEKEEILA 240 PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTPAALAKPH KETGSEPKLI KRYSCPYAGC 300 KRNKDHKKFQ PLKTILCVKN HYKRTHCDKS YICSRCNTKK FSVMADLKTH EKHCGKDKWL 360 CSCGTTFSRK DKLFGHIALF QGHTPAIPLD DTKAVAEPPD PQNRECSSNK VGSVNFCFGS 420 KPSSENVVQN MMDMKGNIDD PVNYFSSLNF EGCNFGAFSE FPQTPFEDSE GSFSFLMSGS 480 FNYGTKFGGG ESSSDNLL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g06980.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017415773.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 1e-178 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A0L9TZ07 | 0.0 | A0A0L9TZ07_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SNI8 | 0.0 | A0A0S3SNI8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143658.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5340 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-180 | C2H2 family protein |