PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g06370.1
Common NameLR48_Vigan02g180100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 532aa    MW: 61140.9 Da    PI: 5.9801
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g06370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.82.9e-28130215187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l L+e+r++++ ++r++++k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Vang06g06370.1 130 RWPRQETLSLLEIRSRLDCKFRENNQKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 215
                     8*************************************7778*****************************8..55667*******85 PP
2trihelix461.4e-14443511168
        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                     rWt+ e+  Li++r+  e+r+r+ g l+ +lW+e+s+k+   gf rs  +Ck+ w++++   +++ +  
  Vang06g06370.1 443 RWTEMEISNLIQLRSGFEQRFREnGYLENGLWDEISAKLGCLGFDRSGSECKQIWDEISISLRRTVDEC 511
                     8*********************8568********************************99999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.5127190IPR001005SANT/Myb domain
CDDcd122039.15E-21129195No hitNo description
PfamPF138372.7E-19129216No hitNo description
PROSITE profilePS500906.888129188IPR017877Myb-like domain
PROSITE profilePS500907.039436501IPR017877Myb-like domain
SMARTSM007170.18440503IPR001005SANT/Myb domain
PfamPF138377.4E-9442514No hitNo description
CDDcd122032.68E-14442507No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
LLFLYSFSLS LSSVNMGDPY GLPEDLRRFI PPRTHMNPSS THLLEPLCLH HGLSPVAAAT  60
TIPPNTYDHN MVGDVFFPRA FTHFAHHHDY SSSSGVNPTN AATAAVSDHA FCSMESAEKG  120
WFGFDSGNNR WPRQETLSLL EIRSRLDCKF RENNQKAPLW NEISRIMAEE FGYQRSGKKC  180
KEKFENLYKY YKKTKEGKAS RQDGKHYRFF RQLEAICGDQ ANANHASTSD KTHRAGANNA  240
NIQTPTFTIN QEHNGDSGNN PKCSESISIS NSSEFETSSS ENNEEDLSAI AFMMRQSREK  300
QKALLDERQS DQRRLRKSWR AKVEENVDSH MRKIIETQDA WMERMLSVVE QREQEMSSKE  360
EERKRKESMW FDQQVHELWA KEKAWVEARD AALIEVVRKH VGIELEAMPL DEAMVEETGN  420
KNKDQGKIES SEFPSEDQRS SSRWTEMEIS NLIQLRSGFE QRFRENGYLE NGLWDEISAK  480
LGCLGFDRSG SECKQIWDEI SISLRRTVDE CDGGKRRPWY LGLKVTDDDD L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g06370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413626.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A0L9TYR80.0A0A0L9TYR8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SNY20.0A0A0S3SNY2_PHAAN; Uncharacterized protein
STRINGXP_007143826.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-79Trihelix family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]