PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g06260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 372aa MW: 41981.7 Da PI: 8.779 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 215 | 234 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ Vang06g06260.1 215 FSCTVCNKTFTRFNNMQMHM 234 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00043 | 300 | 322 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k F + + ++H +++ Vang06g06260.1 300 FECRKCKKAFAVRGDWRTHEKNC 322 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF50729 | 5.9E-8 | 16 | 57 | IPR011993 | PH domain-like |
Pfam | PF07933 | 9.5E-9 | 16 | 57 | IPR012466 | NECAP-1, N-terminal |
Gene3D | G3DSA:2.30.29.30 | 3.6E-10 | 16 | 56 | IPR011993 | PH domain-like |
SuperFamily | SSF57667 | 1.12E-5 | 206 | 238 | No hit | No description |
SMART | SM00355 | 0.15 | 215 | 237 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.783 | 215 | 242 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.4E-6 | 215 | 234 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 217 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 263 | 295 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.41E-5 | 285 | 320 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.6E-5 | 287 | 320 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 61 | 300 | 320 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006897 | Biological Process | endocytosis | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
LDEVVARLAL KIRIWVTSSS RASCTLIEDS RGKHAFIGLE FNERNEAFDF NVALSYHGIH 60 EIALGVAQRL TYLHEELELQ VLLDEDVPKL FYFGLAREGP AAGRVKEKKN PEARRYYCIG 120 MHDSACVEAD EVGNEDSISL SLGLPCHHRS EVLNPKRTSA VRGHQRNPTS DDPSGVTVAL 180 HIGLPTTATK TSSTPTHVRY WIPTTQQILI GPTQFSCTVC NKTFTRFNNM QMHMWGHGSE 240 YRKGSESLRG SKAGSSMLRL PCYCCEEGCR NNINYPRSRP LKDFRTLQTH YKRKHGGKPF 300 ECRKCKKAFA VRGDWRTHEK NCGRLWFCIC GSDFKHKRSL KDHVRAFGNG HAPHSLGEER 360 GSDESEMVFL V* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g06260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414314.1 | 0.0 | PREDICTED: zinc finger protein WIP6-like | ||||
Swissprot | Q9FX68 | 1e-113 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A0L9TYQ1 | 0.0 | A0A0L9TYQ1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007140559.1 | 1e-160 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-112 | C2H2-like zinc finger protein |