PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g06160.1
Common NameLR48_Vigan02g182800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 339aa    MW: 37616.2 Da    PI: 6.3224
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g06160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14156202354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Vang06g06160.1 156 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 202
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-12156202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14157211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-14157209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.71E-5166205No hitNo description
CDDcd048733.93E-6239282No hitNo description
Gene3DG3DSA:3.30.70.2609.8E-4239288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIQEDQGQCS SQAINNYHQA YQDQLLLQQQ MQQQNNDIFG GGGRGGLNMY PGEVSQIMHQ  60
PWSIPHNQVH HPFNTVREHD PFLVPPQPSP YATLFNRRGH SLQFAYDGSS SDHLRIISDT  120
LGPVVQPGSA PFGLQTELAK MTAQEIMEAK ALAASKSHSE AERRRRERIN NHLAKLRSLL  180
PSTTKTDKAS LLAEVIQHVK ELKRQTSLIA ESSPVPTEAD ELTVVDEADE DGRSVIKASL  240
CCEDRSDLFP ELIRTLKALR LRTLKAEITT LGGRVKNVLF ITGEEEDSSS GSEDHNHQQQ  300
YCISSIQEAL KAVMEKSVGE ESASANIKRQ RTNIISMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g06160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413673.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-102BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0L9TYK70.0A0A0L9TYK7_PHAAN; Uncharacterized protein
STRINGXP_007143790.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]