PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g05990.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 489aa MW: 54152.8 Da PI: 8.9249

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g05990.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Vang06g05990.1 59 FICEVCNKGFQREQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	12.8	0.00036	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Vang06g05990.1 135 WKCEKCSKKYAVQSDWKAHSKTC 157 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.84E-7	58	81	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.3E-6	58	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	2.3E-5	59	81	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	59	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	100	130	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.6E-5	123	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.84E-7	130	155	No hit	No description
SMART	SM00355	140	135	155	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MGQKRKIILL FLVRIQFEQV IEAKGFFNNL LFVIFMGVKD PDAEVIELSP KTLMATNRFI 60 CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK STKEQKRKVY LCPEPTCVHH DPSRALGDLT 120 GIKKHYSRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYRCDCGTLF SRRDSFITHR 180 AFCDALAQES ARFPSNLNPL GTHLFGTNHT SLTLSQVGNQ LSQVQNQNQT TSNNILRLGN 240 VGAAVKFEHL IPPLNQSSFG HSPQSMPSSA FFMNDSTNQT LFEEHQSQQG PIFSNKQLHG 300 LMQLTDLHAN TNNSDSSSVA APDSNLFNLS FFPSSNSTST IISDQFNNIS GSDHGTTPPP 360 LYLNNNPAVI DHLGSGFSSL FGDSLENVSS PHMSATVLLQ KASQMGSTTT SNGSSLLRGM 420 CSNNGSKAEN GHHHHSLQGL MNSIANGNTS LFRNMQGNEN NLCGFHNLDE SNNKLPQNLS 480 VNFGVLSL*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MGQKRKIILL FLVRIQFEQV IEAKGFFNNL LFVIFMGVKD PDAEVIELSP KTLMATNRFI  60
CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK STKEQKRKVY LCPEPTCVHH DPSRALGDLT  120
GIKKHYSRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYRCDCGTLF SRRDSFITHR  180
AFCDALAQES ARFPSNLNPL GTHLFGTNHT SLTLSQVGNQ LSQVQNQNQT TSNNILRLGN  240
VGAAVKFEHL IPPLNQSSFG HSPQSMPSSA FFMNDSTNQT LFEEHQSQQG PIFSNKQLHG  300
LMQLTDLHAN TNNSDSSSVA APDSNLFNLS FFPSSNSTST IISDQFNNIS GSDHGTTPPP  360
LYLNNNPAVI DHLGSGFSSL FGDSLENVSS PHMSATVLLQ KASQMGSTTT SNGSSLLRGM  420
CSNNGSKAEN GHHHHSLQGL MNSIANGNTS LFRNMQGNEN NLCGFHNLDE SNNKLPQNLS  480
VNFGVLSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	131	195	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-36	131	195	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g05990.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017415066.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_017415067.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q8GYC1	1e-114	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A0S3SNZ9	0.0	A0A0S3SNZ9_PHAAN; Uncharacterized protein
STRING	XP_007143766.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1536	33	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	7e-98	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]