PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g05760.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 360aa    MW: 37910.4 Da    PI: 8.8379
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g05760.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.11.1e-3696186295
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssgkaak 92 
                     +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++    +      +  +ss++  ++
  Vang06g05760.1  96 TVAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsvggT-----LKIPTSSAA--RP 183
                     5789************************************************************8888844422110.....111111111..11 PP

             TCP  93 saa 95 
                     + +
  Vang06g05760.1 184 DGE 186
                     111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.512102156IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-29102187IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
LLGARKLQTR STFLNSFALP SSSSRCKTCK KTMESNPTHD GDDTSEKLSP PMVDQPESSS  60
PSPSSPQALQ MKEEAMDAEQ GVDMSLPVNV IPMPLTVAKR PSKDRHTKVE GRGRRIRMPA  120
TCAARIFQLT RELGHKSDGE TIRWLLEHAE PAIIEATGTG TVPAIAVSVG GTLKIPTSSA  180
ARPDGEDNPK KRRRRASNSE FIDVNENHVS VSSGLAPIAQ TAYGGVASGG GGGVVPLWNG  240
NGSGPFFMFP NASNPPQYWA IPATAAPFFN VQARPISGFV SALQMHEQDK HSSNGGASDS  300
VNSSSTVGSS MSSVSVTTSA AASSSSAATT TQILRDFSLE IYDKKELQFL GQAPPSSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194KKRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g05760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413821.10.0PREDICTED: transcription factor TCP19
SwissprotQ9LT896e-80TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A0L9U0T90.0A0A0L9U0T9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SN030.0A0A0S3SN03_PHAAN; Uncharacterized protein
STRINGXP_007143360.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-72TCP family protein