PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g05700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 1554aa MW: 173414 Da PI: 7.1966 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00062 | 1438 | 1463 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC C +sF++k +L H r+ + Vang06g05700.1 1438 HKCDldGCRMSFKTKAELLLHKRNlC 1463 799999****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 2.6E-14 | 47 | 87 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.869 | 48 | 89 | IPR003349 | JmjN domain |
Pfam | PF02375 | 4.3E-15 | 49 | 82 | IPR003349 | JmjN domain |
PROSITE profile | PS51184 | 34.077 | 325 | 494 | IPR003347 | JmjC domain |
SMART | SM00558 | 9.2E-46 | 325 | 494 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 3.57E-26 | 326 | 492 | No hit | No description |
Pfam | PF02373 | 5.2E-36 | 358 | 477 | IPR003347 | JmjC domain |
SMART | SM00355 | 11 | 1438 | 1460 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.41E-7 | 1449 | 1498 | No hit | No description |
SMART | SM00355 | 0.67 | 1461 | 1485 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.05 | 1461 | 1490 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.6E-5 | 1463 | 1489 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1463 | 1485 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-10 | 1490 | 1515 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.03 | 1491 | 1520 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0016 | 1491 | 1515 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1493 | 1515 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.08E-10 | 1501 | 1551 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-10 | 1516 | 1544 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.66 | 1521 | 1547 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.263 | 1521 | 1552 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1523 | 1547 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1554 aa Download sequence Send to blast |
LNRISPLLQL TLLLQIFNFP FCFFIFIFIF HVMGSVEIPN WLKELPLAPE FRPTDTEFAD 60 PIAYISKIEK QASNFGICKI IPPLPKPSKK YVFSNLNRSL LKCPDLSPDN SSLGVCNSLK 120 FGSGDGSSDG VSRAVFTTRH QELGQTQSVK KAKGTVQNPQ SGVHKQVWQS GEVYTLEQFE 180 SKSKSFARSL LGSVKDVSPL VIESMFWKAT LEKPIYVEYA NDVPGSAFEE SKGQFHYSHR 240 RLRKRTYYKS RLDSSDCKQT VMGCGRDTQI DDTKGASVQS DADKCLRMTK SVDTVSTFSS 300 NDDSQPFKEK SSDTGNDMQG TAGWKLSNSP WNLQVIARSS GSLTRFMPDD IPGVTSPMVY 360 IGMLFSWFAW HVEDHELHSM NFLHTGSSKT WYAVPGDYAF AFEEVIRTEG YGGNIDHLAA 420 LKLLGEKTTL LSPEVIVASG IPCCRLTQNP GEFVVTFPRA YHVGFSHGFN CGEAANFGTP 480 QWLSVAKEAA VRRAAMNYLP MLSHQQLLYL LTMSFISSVP RTLLPGVRSS RLRDRQKEER 540 EFLVKQAFIE DMVQENKLLS ILLGKEAAKR AVLWKAELLP DSSKGFQLPD LTSTTGTSVA 600 NMPNISSAKK SGHYLLDDEM SLYMDSLTNI DIGGDDLPYH FETDSGALAC VGCGILGFPF 660 MAVIQPTEKL TMELPDNHLI QVSSSDSTAG LHSSISRDLS FSELSSVKEM PDQSLNKCSK 720 CWNTSSKFFR PRIFCLGHAV QIVDMLQSKG GANVLIICHS DYQKIKAHAS EVAVEIHSAF 780 DYNEVPLDTA SPENLTLIDL AVDGEELDEC EDWTSTLGIN LRNWVHTRNN APSKQVPWTL 840 GTLFHDKCPA SNILALNWQS RRFRSKRSSH LAQTKSSHSI ERKKDDRLGG RINDSTADKK 900 LIQYSRRKFK SKHTCFPVAN MVCELQEKSQ KVSATLSANH DSCVSKTLQA EDLRTECALP 960 CASACTEMSS MHPEIQIAEM PISTKMIAAK SQPSNSIPDH VLMIEKLGAE IESQTMQESY 1020 VDRNNDLTLS HSKMHHNTNV SEICGKESQD CQYKKCSSTL SNAPDGNIEM IKKTEIAEAV 1080 IIDSHCNRLT LDDQGHQEYQ SNYKSNNEEA AVSTASMVNQ STLASVDGNV ESPNNNHISE 1140 RISSPIFLEK ANEEGIDSIS EMDKEPRINE SPISKHTPNE VCEVRRELYA SVDLQSNGIL 1200 DDEQQVTQGG KNSKREITHV STEQCCPSSG QCQIESVKKI NEDPVCSYAA KGENKSVTSI 1260 ELGCSEVSVE ACPSKDSCMQ FIPDKEKEMT NQSVNRIDEE LFSGSDTSTK DSFLSVQECS 1320 KIENEIYVTE NINEIKADLS QYKRGLESCE LATEVPRLNS ENKKKRKVER TGNRSNSDNF 1380 IRSPCEGLRP RAGKFAAGKS GVEINQVDKE NQVAKRARRS SEVLVLRKNK KDGVKKSHKC 1440 DLDGCRMSFK TKAELLLHKR NLCPHEGCGK KFSSHKYALL HQRVHDDERP LKCPWKGCSM 1500 SFKWAWARTE HIRVHTGEKP YHCKVEGCGL SFRFVSDFSR HRRKTGHHVK PPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 2e-54 | 308 | 508 | 137 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 2e-54 | 308 | 508 | 137 | 346 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1362 | 1367 | KKKRKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g05700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414683.1 | 0.0 | PREDICTED: probable lysine-specific demethylase ELF6 | ||||
Swissprot | Q6BDA0 | 0.0 | ELF6_ARATH; Probable lysine-specific demethylase ELF6 | ||||
TrEMBL | A0A0S3SNQ8 | 0.0 | A0A0S3SNQ8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143729.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8031 | 30 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |
Publications ? help Back to Top | |||
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