PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g05630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23644.9 Da PI: 8.3699 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.8 | 7.7e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+nk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gkl+ yss Vang06g05630.1 9 ERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSS 59 69***********************************************96 PP | |||||||
2 | K-box | 49.3 | 2.1e-17 | 81 | 138 | 11 | 68 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 ++ + +++qel L+ ++e+Lqr+qR+llGe+Le+Ls+keL++Le+qL++ l + R++ Vang06g05630.1 81 DEAEHQSEQELLVLRVKYESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKH 138 44556689*********************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.385 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-31 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.36E-40 | 2 | 71 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.2E-13 | 83 | 138 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.02 | 84 | 186 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGRGKVVLER IQNKINRQVT FSKRRNGLLK KAFELSVLCD AEIALIIFSS RGKLFQYSST 60 DINRIIEKYR QRCFDMSQIG DEAEHQSEQE LLVLRVKYES LQRTQRNLLG EELEPLSMKE 120 LHSLEKQLDR TLAQARKHLV CNLEQINRNL ESKNIGKCTH CEDYTNQFEA GAATSLRLQQ 180 EQITSKGKEV DTRCLNDNNE WQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-25 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 4e-25 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 4e-25 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 4e-25 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 3e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 3e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 3e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 3e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 3e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 3e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 3e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 3e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g05630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098753 | 1e-156 | BT098753.1 Soybean clone JCVI-FLGm-12N24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014513170.1 | 1e-133 | MADS-box transcription factor 17 isoform X1 | ||||
Swissprot | Q8LLR1 | 2e-54 | MADS3_VITVI; Agamous-like MADS-box protein MADS3 | ||||
TrEMBL | A0A0S3SMV4 | 1e-139 | A0A0S3SMV4_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA10G38580.1 | 1e-101 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13223 | 17 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 3e-51 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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