PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g05600.1
Common NameLR48_Vigan02g218200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 246aa    MW: 27779.7 Da    PI: 8.6237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g05600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.3e-1274126155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ h e+Er+RR+++ +  + Lr+llP ++   ++K s ++   +Av+YI++Lq
  Vang06g05600.1  74 KKMVHREIERQRRQEMATLHASLRSLLPLPF--IKGKRSMSDQMNEAVNYINHLQ 126
                     6889*************************86..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1272145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.38973125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.53E-974130No hitNo description
PfamPF000102.3E-974126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1074144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00279131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MFPLQRGNEL VIQFSNALQP QHKISKDLIL DDHNSDNPPL VAYSDKKVRT RPPNKLFYAP  60
ETSHANSAEE EYAKKMVHRE IERQRRQEMA TLHASLRSLL PLPFIKGKRS MSDQMNEAVN  120
YINHLQKNIK ELSEKRDKLK KKVAINSSLE SRENKHESCG FTVRQTSSGA VGIEISGLSE  180
EGVSLSKLLE LLLEEGLEVV CCLSTKVNGR LLHSLQCEVV NSDTVDLSEL RRKFSNVVPS  240
FRVSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g05600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414275.11e-180PREDICTED: transcription factor bHLH118-like
TrEMBLA0A0L9U0531e-165A0A0L9U053_PHAAN; Uncharacterized protein
STRINGXP_007143341.11e-137(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.18e-30bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]