PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g05270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HSF | ||||||||
Protein Properties | Length: 403aa MW: 46029.7 Da PI: 6.8024 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.7 | 1.2e-35 | 100 | 192 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+i++d++++++isws+ +nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgFkkv+ ++ weF+++ F +g++ ll++ Vang06g05270.1 100 FLTKTYDIVDDPSTDHIISWSKGNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFANEMFLRGQRILLKS 185 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k++ Vang06g05270.1 186 IRRRKTN 192 ****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.8E-38 | 93 | 183 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.5E-59 | 96 | 189 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.67E-35 | 96 | 189 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.3E-19 | 100 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-30 | 100 | 189 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-19 | 138 | 150 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 139 | 163 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-19 | 151 | 163 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
LEHIYKVDNY SKFLLLPIIP VGVPPSIAII KKVKGKPISL FHVARSKLEL YLHSNMNPQG 60 RVKEEFLGES SSFYGGYDPP PIMIVPQPVE GLHETGPPPF LTKTYDIVDD PSTDHIISWS 120 KGNNSFIVWD PQAFSVTLLP RFFKHNNFSS FVRQLNTYGF KKVDPDKWEF ANEMFLRGQR 180 ILLKSIRRRK TNHQSHAMQQ AVDPCVEVGL FGLDGEVDRL KRDRQVLMAE LVKLRQQQQN 240 TRVHIQAMEG RLKRTEQKQQ QTMNFLARAM QNPNFVQQLV QQKELRKELK EAFSKKRCLD 300 QGPSNVVEVG ELACGEEYSS LVKLEAQVLD FEVPDIDLGL NLGEQIGSQK RMEGDYVQVE 360 SMDKDIDEVF WQDLLNEGIE EQGVMGVDVL AQQLGYLASR SK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-24 | 98 | 191 | 27 | 131 | Heat shock factor protein 1 |
5d5v_B | 1e-24 | 98 | 191 | 27 | 131 | Heat shock factor protein 1 |
5d5v_D | 1e-24 | 98 | 191 | 27 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g05270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413956.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 1e-121 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A0L9TZP4 | 0.0 | A0A0L9TZP4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SMT1 | 0.0 | A0A0S3SMT1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143314.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-123 | heat shock transcription factor A6B |