PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g04690.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 784aa MW: 85573.4 Da PI: 5.4195

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g04690.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.3	5.3e-08	89	115	29	56
HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56 +++eL ++lgL+ +qVk+WFqNrR+++k Vang06g04690.1 89 QIQEL-ESLGLENKQVKFWFQNRRTQMK 115 66666.789****************999 PP
2	START	158.9	4e-50	270	519	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 la++a++el+k+ +ae+p+W ks e n +e+ + f++ + + +ea r++g+v+ ++ lve+l+d + +W e+++ +a l+ Vang06g04690.1 270 LALAAMEELLKMTQAESPLWIKSLdgekEVFNHEEYARLFSPCIGpkptgYVTEATRETGIVIINSLALVETLMDAN-RWAEMFPsmiaRAINLD 363 6899******************876666688999999999888****************************.***99999999 PP EECTT...............................EEEE.EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE- CS START 84 vissg...............................galq.lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRa 145 vis+g ++ +m ae q+lsplvp R + f+R+++q+ +g+w++vdvS+d+ + + ++++ + Vang06g04690.1 364 VISNGmggtrngalqvvgffavymldfvlivagtddQDYSfQMHAEVQLLSPLVPvRQVRFIRFCKQHAEGVWAVVDVSIDVGHDAANAQPFMSC 458 *******************************99955552788999**********************************999*** PP EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 146 ellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++lpSg+++++++ng+skvtw+eh++++++ +h+l+r+l++sg+ +ga +w atlqrqce+ Vang06g04690.1 459 RRLPSGCIVQDMPNGYSKVTWLEHWEYDESGVHQLYRPLLSSGVGFGAHRWIATLQRQCEC 519 *********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-10	63	117	IPR009057	Homeodomain-like
SMART	SM00389	0.009	77	121	IPR001356	Homeobox domain
CDD	cd00086	3.62E-7	78	117	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-6	83	121	IPR009057	Homeodomain-like
Pfam	PF00046	1.5E-5	89	115	IPR001356	Homeobox domain
PROSITE profile	PS50071	10.139	94	117	IPR001356	Homeobox domain
PROSITE profile	PS50848	39.428	260	522	IPR002913	START domain
SuperFamily	SSF55961	9.42E-29	262	370	No hit	No description
CDD	cd08875	1.16E-113	264	518	No hit	No description
SMART	SM00234	1.4E-23	269	519	IPR002913	START domain
Pfam	PF01852	5.5E-41	270	519	IPR002913	START domain
SuperFamily	SSF55961	9.42E-29	404	519	No hit	No description
SuperFamily	SSF55961	2.75E-21	547	777	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
LIIISQSISS SMQNSSSFSY SNQRKMEGPS EMGLIGENFD AGLMGRMRDD EYESRSGSDN 60 FDGVSGDDQD GGDDQPQRKK RYHRHTPHQI QELESLGLEN KQVKFWFQNR RTQMKTQLER 120 HENIMLRQEN DKLRAENSLM KEAMSNPVCN SCGGPAIPGQ ISFEEHQIRI ENARLKDELN 180 RICALANKFL GKPISSMTGP MALPTSNSGL ELGIGRSGLG GSSTLGTPLP MGLDLGDGVL 240 GTQTGMPGIR PSLGLMGNEV QLERSMLIDL ALAAMEELLK MTQAESPLWI KSLDGEKEVF 300 NHEEYARLFS PCIGPKPTGY VTEATRETGI VIINSLALVE TLMDANRWAE MFPSMIARAI 360 NLDVISNGMG GTRNGALQVV GFFAVYMLDF VLIVAGTDDQ DYSFQMHAEV QLLSPLVPVR 420 QVRFIRFCKQ HAEGVWAVVD VSIDVGHDAA NAQPFMSCRR LPSGCIVQDM PNGYSKVTWL 480 EHWEYDESGV HQLYRPLLSS GVGFGAHRWI ATLQRQCECL AILMSSSISS DDHTALSQAG 540 RRSMLKLAQR MTSNFCSGVC ASSARKWDML HIGTLGDDMK VMTRKNVDDP GEPPGIVLSA 600 ATSVWMPVSR QRVFDFLRDE RLRSEWDILS NGGPMQEMVH IAKGQGHGNC VSLLRANAVN 660 ANDSSMLILQ ETWMDASCSV VVYAPVDVQS LNVVMSGGDS AYVALLPSGF AIVPDGHCNN 720 STCNGTMQKG GGGEDSGGSL LTVGFQILVN SLPTAKLTVE SVDTVNNLIS CTIQKIKGAL 780 RVA*

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

LIIISQSISS SMQNSSSFSY SNQRKMEGPS EMGLIGENFD AGLMGRMRDD EYESRSGSDN  60
FDGVSGDDQD GGDDQPQRKK RYHRHTPHQI QELESLGLEN KQVKFWFQNR RTQMKTQLER  120
HENIMLRQEN DKLRAENSLM KEAMSNPVCN SCGGPAIPGQ ISFEEHQIRI ENARLKDELN  180
RICALANKFL GKPISSMTGP MALPTSNSGL ELGIGRSGLG GSSTLGTPLP MGLDLGDGVL  240
GTQTGMPGIR PSLGLMGNEV QLERSMLIDL ALAAMEELLK MTQAESPLWI KSLDGEKEVF  300
NHEEYARLFS PCIGPKPTGY VTEATRETGI VIINSLALVE TLMDANRWAE MFPSMIARAI  360
NLDVISNGMG GTRNGALQVV GFFAVYMLDF VLIVAGTDDQ DYSFQMHAEV QLLSPLVPVR  420
QVRFIRFCKQ HAEGVWAVVD VSIDVGHDAA NAQPFMSCRR LPSGCIVQDM PNGYSKVTWL  480
EHWEYDESGV HQLYRPLLSS GVGFGAHRWI ATLQRQCECL AILMSSSISS DDHTALSQAG  540
RRSMLKLAQR MTSNFCSGVC ASSARKWDML HIGTLGDDMK VMTRKNVDDP GEPPGIVLSA  600
ATSVWMPVSR QRVFDFLRDE RLRSEWDILS NGGPMQEMVH IAKGQGHGNC VSLLRANAVN  660
ANDSSMLILQ ETWMDASCSV VVYAPVDVQS LNVVMSGGDS AYVALLPSGF AIVPDGHCNN  720
STCNGTMQKG GGGEDSGGSL LTVGFQILVN SLPTAKLTVE SVDTVNNLIS CTIQKIKGAL  780
RVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g04690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017415466.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A0S3SN04	0.0	A0A0S3SN04_PHAAN; Uncharacterized protein
STRING	XP_007143378.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	0.0	homeodomain GLABROUS 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]