PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g04660.1 | ||||||||
Common Name | LR48_Vigan02g215800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22292.8 Da PI: 5.0412 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.5e-19 | 47 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+Wv+e+r+p +k++r++lg+f tae+Aa+a++ a+++l+g Vang06g04660.1 47 PVFRGVRRRD-SGKWVCEVREP---NKKTRIWLGTFPTAEMAARAHDVAALALRG 97 579****999.7******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-14 | 47 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-21 | 48 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.655 | 48 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-32 | 48 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-32 | 48 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-9 | 49 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.44E-31 | 49 | 107 | No hit | No description |
PRINTS | PR00367 | 7.9E-9 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MFSTDPQATS PDSGGSRPAL SDEEVFLAAS HPKKRAGRKK FRETRHPVFR GVRRRDSGKW 60 VCEVREPNKK TRIWLGTFPT AEMAARAHDV AALALRGRSA CLNFADSANR LPVPATADPR 120 DIQKAAAEAA EAFRPGNESG KDDDAVVETV ATATENVEEK EMEDLRNMVL MSPTHCFESD 180 EYGSTEMEFE DIEVSLWSYS L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-15 | 46 | 109 | 12 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g04660.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413972.1 | 1e-147 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9FJ93 | 7e-59 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A0L9TZK1 | 1e-146 | A0A0L9TZK1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SMU7 | 1e-146 | A0A0S3SMU7_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143366.1 | 1e-128 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 1e-45 | ERF family protein |