PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang06g04030.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 489aa MW: 54041.5 Da PI: 6.3601 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 25.5 | 2.8e-08 | 184 | 241 | 4 | 62 |
XCHHHCHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkae...ieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 k rr+++NReAAr+sR+RKk + + L+ v++Le+ + +l +l++e ++ +++ Vang06g04030.2 184 QKTLRRLAQNREAARKSRLRKKTSyrnVVTLQAYVQQLESSRL----KLTQLEQELQRARQQ 241 6888******************86222677**********994....377888887776666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.9E-7 | 175 | 242 | No hit | No description |
SMART | SM00338 | 0.0022 | 181 | 244 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 188 | 203 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.5E-32 | 285 | 360 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 489 aa Download sequence Send to blast |
MSLPVIPHGQ KHSCVCVEDE KGTARGMPSF NPQLPNSNAC YTEGSTVDSF RLSDFDQSVG 60 YRIEDAVALS GNSILDSLKV SSQTISRGVI QLGSFDKLPT SLDKSILTNQ TEQQSLQFQK 120 VHTSNLVTGD TEHQEEFAMA DASPRTDIST DADTDDKNPQ FDRNQALAAV ASDSSDRSKD 180 KTDQKTLRRL AQNREAARKS RLRKKTSYRN VVTLQAYVQQ LESSRLKLTQ LEQELQRARQ 240 QVGCNYSLEG VFISSSGDQA HSMSGNGAMA FDAEYARWLE EQNRQINELR SAVNSHAGDT 300 ELCMIIDGVM AHYDEIFRLK ANAAKADVFH LLSGMWKTPA ERCFLWLGGF RSSELLKLLV 360 NQLEPLTEQQ LVGITNLQQS SQQAEDALSQ GMEALQQSLS ETLSTGSLGS SGSSGNVANY 420 MGQMAMAMGK LGTLEGFIKQ ADNLRQQTLQ QIHRILTTRQ SARALLAIHD YFSRLRALSS 480 LWLARPRD* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang06g04030.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT093315 | 0.0 | BT093315.1 Soybean clone JCVI-FLGm-24E7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414991.1 | 0.0 | PREDICTED: transcription factor TGA6-like | ||||
Refseq | XP_017414992.1 | 0.0 | PREDICTED: transcription factor TGA6-like | ||||
Swissprot | Q6IVC2 | 0.0 | TGAL1_ORYSJ; Transcription factor TGAL1 | ||||
TrEMBL | A0A0S3SKZ3 | 0.0 | A0A0S3SKZ3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142625.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1470 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-145 | TGACG motif-binding factor 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|