PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g04030.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 445aa MW: 49252 Da PI: 6.1268

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g04030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.4	8.7e-10	158	199	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Vang06g04030.1 158 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 199 6889*************************9777777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.2E-8	149	202	No hit	No description
SMART	SM00338	8.6E-8	155	218	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	157	201	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-7	159	202	No hit	No description
CDD	cd14708	1.12E-21	159	211	No hit	No description
Pfam	PF00170	7.4E-7	159	199	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	162	177	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.5E-32	241	316	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MPSFNPQLPN SNACYTEGST VDSFRLSDFD QSVGYRIEDA VALSGNSILD SLKVSSQTIS 60 RGVIQLGSFD KLPTSLDKSI LTNQTEQQSL QFQKVHTSNL VTGDTEHQEE FAMADASPRT 120 DISTDADTDD KNPQFDRNQA LAAVASDSSD RSKDKTDQKT LRRLAQNREA ARKSRLRKKA 180 YVQQLESSRL KLTQLEQELQ RARQQGVFIS SSGDQAHSMS GNGAMAFDAE YARWLEEQNR 240 QINELRSAVN SHAGDTELCM IIDGVMAHYD EIFRLKANAA KADVFHLLSG MWKTPAERCF 300 LWLGGFRSSE LLKLLVNQLE PLTEQQLVGI TNLQQSSQQA EDALSQGMEA LQQSLSETLS 360 TGSLGSSGSS GNVANYMGQM AMAMGKLGTL EGFIKQADNL RQQTLQQIHR ILTTRQSARA 420 LLAIHDYFSR LRALSSLWLA RPRD*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MPSFNPQLPN SNACYTEGST VDSFRLSDFD QSVGYRIEDA VALSGNSILD SLKVSSQTIS  60
RGVIQLGSFD KLPTSLDKSI LTNQTEQQSL QFQKVHTSNL VTGDTEHQEE FAMADASPRT  120
DISTDADTDD KNPQFDRNQA LAAVASDSSD RSKDKTDQKT LRRLAQNREA ARKSRLRKKA  180
YVQQLESSRL KLTQLEQELQ RARQQGVFIS SSGDQAHSMS GNGAMAFDAE YARWLEEQNR  240
QINELRSAVN SHAGDTELCM IIDGVMAHYD EIFRLKANAA KADVFHLLSG MWKTPAERCF  300
LWLGGFRSSE LLKLLVNQLE PLTEQQLVGI TNLQQSSQQA EDALSQGMEA LQQSLSETLS  360
TGSLGSSGSS GNVANYMGQM AMAMGKLGTL EGFIKQADNL RQQTLQQIHR ILTTRQSARA  420
LLAIHDYFSR LRALSSLWLA RPRD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g04030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093315	0.0	BT093315.1 Soybean clone JCVI-FLGm-24E7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414991.1	0.0	PREDICTED: transcription factor TGA6-like
Refseq	XP_017414992.1	0.0	PREDICTED: transcription factor TGA6-like
Swissprot	Q6IVC2	0.0	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A0A0S3SKZ3	0.0	A0A0S3SKZ3_PHAAN; Uncharacterized protein
STRING	XP_007142625.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-152	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]