PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g02830.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 728aa    MW: 81109 Da    PI: 5.912
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g02830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.4e-1862117156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+eq+ e+e +F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R++ k
  Vang06g02830.1  62 KKRYHRHTHEQIMEMECFFKECPHPDDRQRRELSRELGLDILQVKFWFQNKRTQVK 117
                     688999**********************************************9877 PP
2START173.61.3e-542584726206
                     HHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
           START   6 aaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                     a++e+  +a+a+ p+W   s   e++n+de+l++f+++ +      ++ea+r s+vv+m+  +lve+++d++ qW +++     +a++++v++ g
  Vang06g02830.1 258 AMKEFTNLAEAGNPLWLPGScgcEILNQDEYLRSFPKGIGptpldVKIEASRQSAVVIMDYNKLVEIFMDVN-QWANMFCgiisRAAIHQVLEVG 351
                     799****************9*****************999****99**************************.******99************** PP

                     ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
           START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                           ga q+m+ae+q++splvp Rd +fvR++++++ ++w+ivd S d+ ++ +    + +++++pSg+li++++ng+sk++w+eh++l+++ 
  Vang06g02830.1 352 qteildGACQVMSAEFQVPSPLVPvRDDYFVRFCKRKNLESWTIVDFSMDQLRPGS----FTKSRRRPSGCLITELPNGYSKIVWIEHIELEDNE 442
                     ******************************************************97....899999***************************** PP

                     XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 177 phwllrslvksglaegaktwvatlqrqcek 206
                     +h l++s v+sgla+gak+wva l+rqce+
  Vang06g02830.1 443 VHDLYKSYVNSGLAFGAKRWVASLDRQCER 472
                     ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-1941117IPR009057Homeodomain-like
SuperFamilySSF466891.09E-1748119IPR009057Homeodomain-like
PROSITE profilePS5007115.79159119IPR001356Homeobox domain
SMARTSM003892.8E-1761123IPR001356Homeobox domain
CDDcd000863.49E-1762120No hitNo description
PfamPF000461.1E-1562117IPR001356Homeobox domain
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PROSITE profilePS5084835.262244475IPR002913START domain
SuperFamilySSF559612.06E-27245474No hitNo description
CDDcd088755.49E-96248471No hitNo description
SMARTSM002346.9E-40253472IPR002913START domain
PfamPF018522.2E-45258472IPR002913START domain
SuperFamilySSF559612.06E-23494724No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MYQYNTNSWN SQQQQQQSIL EKPPQRTFLE NELGRNIDGE SSSNERRVPS SSDRDPNKQS  60
GKKRYHRHTH EQIMEMECFF KECPHPDDRQ RRELSRELGL DILQVKFWFQ NKRTQVKSQH  120
DRHENNLLKA ENDKLRAENT RYKEALSHAS CPNCGGLSGE MSFDEQQLRT ENMRLREEIE  180
KMSAMIPRFA VKPGSLYHNM SSQNQMIPPP SLDQGVGNYG AHTVIIGEML GANNEPLGAL  240
PIANDFEKDI VMEIGSVAMK EFTNLAEAGN PLWLPGSCGC EILNQDEYLR SFPKGIGPTP  300
LDVKIEASRQ SAVVIMDYNK LVEIFMDVNQ WANMFCGIIS RAAIHQVLEV GQTEILDGAC  360
QVMSAEFQVP SPLVPVRDDY FVRFCKRKNL ESWTIVDFSM DQLRPGSFTK SRRRPSGCLI  420
TELPNGYSKI VWIEHIELED NEVHDLYKSY VNSGLAFGAK RWVASLDRQC ERLASSMATN  480
IPHKSIGVLT NSGGRRSMMR LAERMMLSFC TAVGASTANA WTLITDASED VRVMTRKSVD  540
DPGRPSGIVL SASTSLWLPI PSRTVFDFLR SENSRNQWDI LSNGGQVEEL AHIANGHDTG  600
NCVSLLRVNT PNFGQSNMTM LQETCTDATG SFVVYAPVDL ISMNAVLRGG NPDCVALLPS  660
GFAVLPDGPE PMNNEGPIRE VGSGGCLLTV AFQILVDSVP TSKLSATSVT TVSSLIKCIV  720
ERIQAVV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g02830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412341.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A0S3SMF70.0A0A0S3SMF7_PHAAN; Uncharacterized protein
STRINGXP_007143210.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]