PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g02430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 159aa MW: 17480.5 Da PI: 8.1139 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F++ L H +H Vang06g02430.1 90 HRCTVCNKAFPSYQALGGHKASH 112 79**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.72E-5 | 89 | 114 | No hit | No description |
Pfam | PF13912 | 5.4E-14 | 90 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.369 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MALEALNSPT APAAPFRAYQ EEEELDHQFR EPWSKRKRSK RPRFETEEEY LALCLIMLAQ 60 GGNNTNTSSH RQTQHSESQK EPSPPLKLSH RCTVCNKAFP SYQALGGHKA SHRKSSSEST 120 SVSAVASDSV TASTAGGGRM HEQNLFIAFG LFFVIDAI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g02430.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413573.1 | 1e-99 | PREDICTED: zinc finger protein ZAT10-like | ||||
Swissprot | Q9SSW1 | 2e-26 | AZF1_ARATH; Zinc finger protein AZF1 | ||||
TrEMBL | A0A0L9U1B3 | 3e-98 | A0A0L9U1B3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SM96 | 3e-98 | A0A0S3SM96_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA10G40400.1 | 2e-65 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 2e-22 | zinc-finger protein 1 |
Publications ? help Back to Top | |||
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