PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g00830.1 | ||||||||
Common Name | LR48_Vigan02g247900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 352aa MW: 38979 Da PI: 4.5052 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.7e-17 | 118 | 166 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr++k +g+W+AeIrd + + +r++lg+f taeeA +a++a r+++e Vang06g00830.1 118 KYRGVRQRK-WGKWAAEIRDpF-----QsTRIWLGTFNTAEEASQAYEARRLEFE 166 8*******9.**********55.....45********************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.6E-11 | 118 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-16 | 118 | 165 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-21 | 118 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-17 | 118 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.43E-23 | 118 | 165 | No hit | No description |
PROSITE profile | PS51032 | 19.941 | 118 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MPESRKQLTF KPRQKPHHSV QESKAMRKLR IIYNDPDATD SSDDESEVFQ KSKKARRNFC 60 EIPLPPLPQT FTTPETNSFE VNSNSNAVRV KVCIEGQPQT KKRVLTQTPS TRRNTSGKYR 120 GVRQRKWGKW AAEIRDPFQS TRIWLGTFNT AEEASQAYEA RRLEFEAKAK ARAYKNVSEP 180 LSTTSDKSIC CNSSDAAAVS VSEKFSTTSD DSDGVLSHPS PSSVLELDSS SSKPIDNDNG 240 LSEEAVETNN LVSEFAELEI PDLSLLNLPS PFIGATAGLA SGTEPDFGID FDWLSLEDYG 300 QGFDDFGGLE DIRICGFDNN EPSKLPDFDF GDFCAEEFAG WTEEPLNIPC A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-12 | 117 | 159 | 13 | 56 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g00830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412417.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A0A0L9U1N5 | 0.0 | A0A0L9U1N5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SLN9 | 0.0 | A0A0S3SLN9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142907.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 4e-37 | ERF family protein |
Publications ? help Back to Top | |||
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