PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g00670.1

Common Name

LR48_Vigan02g249200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 463aa MW: 51440.5 Da PI: 6.1422

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g00670.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	4e-10	174	213	4	40
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 k rr+++NReAAr+sR+RKka++++Le + ++Le+ Vang06g00670.1 174 QKTVRRLAQNREAARKSRLRKKAYVQQLESsrvRLAQLEQ 213 67889***********************973224444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.9E-8	164	220	No hit	No description
SMART	SM00338	1.8E-9	171	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.312	173	217	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-7	175	214	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.66E-20	175	222	No hit	No description
SuperFamily	SSF57959	5.22E-7	175	218	No hit	No description
PROSITE pattern	PS00036	0	178	193	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-29	260	334	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MQSFNPTESE STSPLYSHSS FIHRGNDANP NPTRFSDLQH SFRQHDAVDL SSSSVFGAKS 60 NNMAVVASNL QCGTFNTNLG GAEFGSTVVG CVETESQHMY QRGNCSATMP MGNQYVEKWA 120 DDSQHTEDTC TDIDTDDKNQ CFSTVSWGNG VGDGALVVVD SQDQSKTKVK PEDQKTVRRL 180 AQNREAARKS RLRKKAYVQQ LESSRVRLAQ LEQELQRARQ QGVLIANGLT AERGHSVVGN 240 GALAFDMDYV RWVDEHQRLI NDLRSAINSR MGDNELYVLV DGVMAHYDEL FRLKSIGAKA 300 DVFHILSGMW KTPAERCFIW LGGFRSSELL KIVRNQLEPL TEEQLMGIYN LQQSSQQAED 360 ALSQGMEALQ QSLSDTLSTS SQGSSGSGNV AEYMGQMAIA LGKLATLESF LHQADLLRQQ 420 TLQQMRRILT TFQAARALLV INDYVSRLRA LNSLWLACPR EY*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MQSFNPTESE STSPLYSHSS FIHRGNDANP NPTRFSDLQH SFRQHDAVDL SSSSVFGAKS  60
NNMAVVASNL QCGTFNTNLG GAEFGSTVVG CVETESQHMY QRGNCSATMP MGNQYVEKWA  120
DDSQHTEDTC TDIDTDDKNQ CFSTVSWGNG VGDGALVVVD SQDQSKTKVK PEDQKTVRRL  180
AQNREAARKS RLRKKAYVQQ LESSRVRLAQ LEQELQRARQ QGVLIANGLT AERGHSVVGN  240
GALAFDMDYV RWVDEHQRLI NDLRSAINSR MGDNELYVLV DGVMAHYDEL FRLKSIGAKA  300
DVFHILSGMW KTPAERCFIW LGGFRSSELL KIVRNQLEPL TEEQLMGIYN LQQSSQQAED  360
ALSQGMEALQ QSLSDTLSTS SQGSSGSGNV AEYMGQMAIA LGKLATLESF LHQADLLRQQ  420
TLQQMRRILT TFQAARALLV INDYVSRLRA LNSLWLACPR EY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g00670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-150	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413339.1	0.0	PREDICTED: transcription factor TGA2-like
Swissprot	Q41558	1e-157	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A0L9U0Y0	0.0	A0A0L9U0Y0_PHAAN; Uncharacterized protein
STRING	XP_007142889.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-129	bZIP family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]