PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g00440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 455aa MW: 49106.4 Da PI: 9.7792 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.2e-05 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Vang06g00440.1 75 FICEVCNKGFQREQNLQLHRRGH 97 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00052 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Vang06g00440.1 151 WKCDKCSKKYAVQSDWKAHSKTC 173 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.29E-7 | 74 | 97 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-6 | 74 | 97 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 75 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.99 | 75 | 97 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.1E-5 | 75 | 97 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 116 | 146 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 139 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.29E-7 | 146 | 171 | No hit | No description |
SMART | SM00355 | 150 | 151 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
LLQHMAASSS SASLFGFREE DQNQMKQQHS LTPSSSATPA APPPQKKKRN QPGTPYPDAE 60 VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLKQKTTKE PKRKVYLCPE 120 PTCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS KTCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAQESARHP PNLGAAIGTH LFGTTANTIP LNLSQVASHI 240 SNIQDPNTQP TELLRLGGAA ARTSQFDHLL AAQMGASSSN STASLLKSFG SASSSSGSKS 300 EQHRPLVNAA NYGGGIFGGN VNEQGNSNLQ DLMNSFAVGG NSSIFEGGFE AYDHNSNNNN 360 REGKVHAMSG SSSIGGSDRL TRDFLGVGQI VRGMSGSGGV AQREQQQQQH GFNLSSLEAD 420 QRNNSNSNNN NNAAPSGQAF GGGGGNFQDL NMLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g00440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414940.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_017414941.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_017414942.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like | ||||
TrEMBL | A0A0S3SLJ5 | 0.0 | A0A0S3SLJ5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142834.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-105 | indeterminate(ID)-domain 5 |