PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g00280.1

Common Name

LR48_Vigan02g254100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 323aa MW: 35731.2 Da PI: 6.9067

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g00280.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104	9e-33	29	82	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+++LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Vang06g00280.1 29 PRLRWTPELHRCFVHAIDSLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRS 82 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.901	25	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-31	25	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.74E-15	27	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-23	29	82	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	30	81	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
LLCIYKIKLN MGSCGREGAV RQYIRSKVPR LRWTPELHRC FVHAIDSLGG HQKATPKLVL 60 QLMDVKGLTI SHVKSHLQMY RSMRGDLGRQ GRTHSQHRNQ SFEEHDDGCV DEVNDVCVEY 120 SCSKPMGIES DSFFGHSNLP PKRARIETRS SISESLQCSQ RLCDAVPNPY CFYDYLQKPM 180 AEHKGIKEFC KASTWQTQPH SSLLLPHFPT LTSFQCPNQQ SDFLQVTTLN EGKSSGKGIN 240 VDVNTETGEA EVEDVGGYEL SLSLTLPNPS PQRSNCSCSG SEISETISSC PAAGFSNYKD 300 CTSSSNLNET INLDLSLALC GN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-21	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-21	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-21	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-21	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-21	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-21	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-21	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-21	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-21	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-21	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-21	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-21	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g00280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098225	0.0	BT098225.1 Soybean clone JCVI-FLGm-16F9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413879.1	0.0	PREDICTED: uncharacterized protein LOC108325332
TrEMBL	A0A0L9U0U5	0.0	A0A0L9U0U5_PHAAN; Uncharacterized protein
STRING	XP_007142823.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-35	G2-like family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]