PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g00230.1

Common Name

LR48_Vigan02g254900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 586aa MW: 66497.8 Da PI: 4.7307

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g00230.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.3	2.8e-13	348	392	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++Er+RR+++N+++ +Lr+l+P + Kl+ a+iL A+eY+k+Lq Vang06g00230.1 348 LMAERKRRKKLNDRLYKLRSLVPRiS------KLDRASILGDAIEYVKDLQ 392 589*******************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.7E-19	30	178	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	3.38E-14	341	396	No hit	No description
PROSITE profile	PS50888	16.075	342	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.02E-17	344	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-11	347	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-16	348	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-17	349	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS51671	8.719	485	557	IPR002912	ACT domain
CDD	cd04873	0.00123	486	549	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0009555	Biological Process	pollen development
GO:0048657	Biological Process	anther wall tapetum cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0000978	Molecular Function	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
LLLSTNQRCS ENQLALIEEG DMNIVMQNLV ERLRSLVGLN GWDYCIYWKL SEDERFLEWL 60 GCCCGGTESN KNAGEEHLFP VSSVVSCRDT TYPHPRTKPC DLLSQLSTSI PIDNSGIYTQ 120 TLLTNQPSWV NYSNSLDSSI LDETMGTQVL ISAPGGLIEL FVTKQVAEDH QVIDFVKSQC 180 IEAVNHSMSF NIDVNSMSNM QQNPLLGDEN EGNNSRNTHF HPSDVMTMDH RIGLCSSPLN 240 FMQQFNYNQL NRMKSDAFSE EYQGSFFHDK QTNPEDEHDN TYQKSLMTTD SQYMESLEAK 300 EKQEEDKELL KHVVARSDSM SDCSEQNEEE EDGKYRRRNG KGNQSKNLMA ERKRRKKLND 360 RLYKLRSLVP RISKLDRASI LGDAIEYVKD LQKQVKELQD ELEENADTES NCINGNNDNN 420 NNQYVGVGEL CPNSEPAKGQ SGLHVGTSAN GYVYKQKEDA ALIEKQTQQM EPQVEVALID 480 GNEYFVKVFC EHRPGGFVKL MESLNTIGMD VVHATVTSHK GLVSNVFEVE KKDNETVEAE 540 DVRESLLELT RNRYRGWSHE VTPTSENAVG RDQHQIPSFS HHFHT*

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

LLLSTNQRCS ENQLALIEEG DMNIVMQNLV ERLRSLVGLN GWDYCIYWKL SEDERFLEWL  60
GCCCGGTESN KNAGEEHLFP VSSVVSCRDT TYPHPRTKPC DLLSQLSTSI PIDNSGIYTQ  120
TLLTNQPSWV NYSNSLDSSI LDETMGTQVL ISAPGGLIEL FVTKQVAEDH QVIDFVKSQC  180
IEAVNHSMSF NIDVNSMSNM QQNPLLGDEN EGNNSRNTHF HPSDVMTMDH RIGLCSSPLN  240
FMQQFNYNQL NRMKSDAFSE EYQGSFFHDK QTNPEDEHDN TYQKSLMTTD SQYMESLEAK  300
EKQEEDKELL KHVVARSDSM SDCSEQNEEE EDGKYRRRNG KGNQSKNLMA ERKRRKKLND  360
RLYKLRSLVP RISKLDRASI LGDAIEYVKD LQKQVKELQD ELEENADTES NCINGNNDNN  420
NNQYVGVGEL CPNSEPAKGQ SGLHVGTSAN GYVYKQKEDA ALIEKQTQQM EPQVEVALID  480
GNEYFVKVFC EHRPGGFVKL MESLNTIGMD VVHATVTSHK GLVSNVFEVE KKDNETVEAE  540
DVRESLLELT RNRYRGWSHE VTPTSENAVG RDQHQIPSFS HHFHT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	335	356	RRRNGKGNQSKNLMAERKRRKK
2	350	357	ERKRRKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g00230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413235.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBL	A0A0L9U1V8	0.0	A0A0L9U1V8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SLL3	0.0	A0A0S3SLL3_PHAAN; Uncharacterized protein
STRING	GLYMA10G42830.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4225	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-137	bHLH family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]