PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0697s00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 343aa MW: 38452.4 Da PI: 7.3388 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.8 | 1.8e-31 | 20 | 74 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rF ea++qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl Vang0697s00020.1 20 KPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 74 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 18 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.23E-16 | 19 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-22 | 20 | 75 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.9E-8 | 22 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.9E-23 | 119 | 165 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDLQNVENRT MRLVLSTDAK PRLKWTPELH QRFTEAINQL GGAEKATPKS LMRVMGIPGL 60 TLYHLKSHLQ KYRLGKNSPP ETCSDNKQQG FSDIQSSDVR CSREISIRTQ NQMNDRSLKI 120 AEALQMQMEV QRKLYEQIEV QRHLQLRIEA QGKYLQSVLS KAHETLARYD SSTTGIELAK 180 SELSQLVSII NNACPTSPVS ELTETRGMSL NCGEMKQDRG TMCSLESSLT SSESSGRTEV 240 RQALDEAEKP QKTNGISVEL PLMEIHQEGT AFKGYTSEWR KRSAATDSSG CCVDQPCGKK 300 CGNKLRKCEL SDMLDLNSQY ERDIDSSVKE IDLNCSSSFW GQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0697s00020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424791.1 | 0.0 | PREDICTED: myb family transcription factor PHL8-like | ||||
Swissprot | F4I274 | 7e-75 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A0S3R1K2 | 0.0 | A0A0S3R1K2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158649.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5218 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.2 | 2e-79 | G2-like family protein |
Publications ? help Back to Top | |||
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