PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0685s00030.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

M-type_MADS

Protein Properties

Length: 116aa MW: 13092.1 Da PI: 10.0803

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0685s00030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.9	1.1e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly+++s Vang0685s00030.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 59 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.357	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-39	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-29	2	75	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.59E-37	2	69	No hit	No description
PRINTS	PR00404	2.1E-28	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-28	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFASS 60 RGDEMANQYY YSNKSAYIIK QSGVFFQDEV GLEIRIVELD EKNRVRSNLI TVLKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	9e-19	1	75	1	75	MEF2C
5f28_B	9e-19	1	75	1	75	MEF2C
5f28_C	9e-19	1	75	1	75	MEF2C
5f28_D	9e-19	1	75	1	75	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269\|PubMed:17704216, ECO:0000269\|PubMed:24876250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0685s00030.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269\|PubMed:18579782}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	8e-97	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007141291.1	2e-35	hypothetical protein PHAVU_008G1837001g, partial
Refseq	XP_007141292.1	2e-35	hypothetical protein PHAVU_008G1837001g
Refseq	XP_017430186.1	8e-36	PREDICTED: agamous-like MADS-box protein AGL21
Refseq	XP_020963290.1	2e-35	MADS-box transcription factor 27 isoform X2
Refseq	XP_027331266.1	2e-35	MADS-box transcription factor 23-like
Swissprot	A2RVQ5	1e-32	AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBL	A0A445LRZ3	2e-43	A0A445LRZ3_GLYSO; MADS-box transcription factor ANR1 isoform A
STRING	Gorai.009G227500.1	4e-35	(Gossypium raimondii)
STRING	evm.model.supercontig_177.14	3e-35	(Carica papaya)
STRING	GLYMA02G38091.1	8e-35	(Glycine max)
STRING	XP_007141292.1	6e-35	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	5e-35	AGAMOUS-like 16

Publications ? help Back to Top
Yang K,Jiang M,Le J A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell. J Integr Plant Biol, 2014. 56(6): p. 539-49 [PMID:24386951]