PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0658s00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 342aa MW: 38620.2 Da PI: 6.3611 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.3 | 4e-13 | 18 | 62 | 9 | 56 |
AP2 9 dkkrgrWvAeIrd.psengkr..krfslgkfgtaeeAakaaiaarkklege 56 ++ +g++ AeIrd + r +lg+f+taeeAa+a+++a+++l+g+ Vang0658s00060.1 18 RP-WGKYGAEIRDaR-----KptGRQWLGTFDTAEEAARAYDRAALQLRGA 62 56.**********55.....344789**********************995 PP | |||||||
2 | AP2 | 54 | 4.1e-17 | 100 | 150 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g++ AeIrdp++ r +lg+f+taeeAa+a+++a+ l+g Vang0658s00060.1 100 KYRGVRKRP-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDRAAIGLRG 150 8********.**********97744...688*******************99988 PP | |||||||
3 | AP2 | 26.5 | 1.6e-08 | 252 | 278 | 30 | 56 |
AP2 30 rfslgkfgtaeeAakaaiaarkklege 56 r +lg+f+tae Aa+a+++a+ +l+g+ Vang0658s00060.1 252 RQWLGTFDTAEAAARAYDRAAIELRGA 278 56**********************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.624 | 8 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-22 | 17 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-17 | 17 | 70 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-23 | 17 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.22E-23 | 17 | 71 | No hit | No description |
Pfam | PF00847 | 6.5E-7 | 18 | 61 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.314 | 100 | 158 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.95E-30 | 100 | 159 | No hit | No description |
SMART | SM00380 | 2.1E-32 | 100 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-21 | 100 | 160 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-29 | 100 | 160 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-10 | 100 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 124 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.236 | 227 | 285 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-11 | 245 | 287 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-16 | 245 | 287 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-7 | 247 | 290 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-4 | 254 | 277 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MMLDVNVTMH NTWQNLKRPW GKYGAEIRDA RKPTGRQWLG TFDTAEEAAR AYDRAALQLR 60 GALAILNFPD ASANSSTTGI GSSCSSQHKE VIEFEYLDDK YRGVRKRPWG KFGAEIRDPT 120 KPTGRQWLGT FDTAEEAARA YDRAAIGLRG ALAILNFPDE YYSHLPFLLS SNSSTVDSGS 180 SFARKEVIEF EYLDDKVQHH RSLRKFHQSH RHEFCQSILF MISQTLKFNF IFKREILPDE 240 EAMLDPTKPT GRQWLGTFDT AEAAARAYDR AAIELRGALA ILNFPDEYHS HLPFLSSSSS 300 SSASVIGSSS TAQGEVIEFE YLDDKVLEDL LESEEKRKKK E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-26 | 10 | 326 | 12 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0658s00060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-164 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017408260.1 | 6e-65 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 9e-32 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A0L9TBR4 | 1e-63 | A0A0L9TBR4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138829.1 | 1e-57 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-16 | ERF family protein |
Publications ? help Back to Top | |||
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