PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0652s00030.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 352aa    MW: 40161.1 Da    PI: 6.3221
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0652s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85e-272978150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien  nrqvtfskRrng++KKA+ELS+LCd+++avi+fs++g++  +s
  Vang0652s00030.1 29 KRIENPVNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFS 78
                      79********************************************9997 PP
2K-box20.22.4e-081321991178
             K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                       +++ e+lqqe+++L++++++ ++++R +  ++L+  s+ +L++ e++L + l+++ ++K+ l+  +++
  Vang0652s00030.1 132 NSEIEELQQEVNRLQQQLQMAEEQIRLYEPDSLKMSSMADLENSEKHLLDVLTRVMQRKEYLMSHHLS 199
                       57899**********************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-372180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.12181IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-2922105IPR002100Transcription factor, MADS-box
CDDcd002651.13E-342295No hitNo description
PRINTSPR004046.5E-252343IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002377IPR002100Transcription factor, MADS-box
PfamPF003191.3E-253077IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-254358IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-255879IPR002100Transcription factor, MADS-box
PfamPF014862.2E-5134199IPR002487Transcription factor, K-box
PROSITE profilePS512976.941135236IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
LHNININNNI KPSLHINIIV MGRVKLEIKR IENPVNRQVT FSKRRNGLIK KAYELSILCD  60
IDIAVIMFSP SGRVNHFSGR RRIEDVFTRY INLPDQERDK GIQNKEYLLR TLQQLRNEND  120
IALQLANPGD INSEIEELQQ EVNRLQQQLQ MAEEQIRLYE PDSLKMSSMA DLENSEKHLL  180
DVLTRVMQRK EYLMSHHLSS FDPSSIQGIP TSFDNVGWLQ DGNQNHAQIF DASAPLDPLR  240
DLSSTVYGSF SQGTSSNVAD PRGIGECHVS NPSDGTLQPW PQCYTLYPHH HIQHDMVGPD  300
MPDMMPHAQV NIPITTSHVE APKNEPVEFD QSKQQSQTHP HTHQHQQLNA Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-142178158Myocyte-specific enhancer factor 2B
1tqe_Q1e-142178158Myocyte-specific enhancer factor 2B
1tqe_R1e-142178158Myocyte-specific enhancer factor 2B
1tqe_S1e-142178158Myocyte-specific enhancer factor 2B
6c9l_A1e-142178158Myocyte-specific enhancer factor 2B
6c9l_B1e-142178158Myocyte-specific enhancer factor 2B
6c9l_C1e-142178158Myocyte-specific enhancer factor 2B
6c9l_D1e-142178158Myocyte-specific enhancer factor 2B
6c9l_E1e-142178158Myocyte-specific enhancer factor 2B
6c9l_F1e-142178158Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0652s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428752.10.0PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-110AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A0S3RMI10.0A0A0S3RMI1_PHAAN; Uncharacterized protein
STRINGXP_007141136.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-94AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]