PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0615s00090.1 | ||||||||
Common Name | LR48_Vigan09g121100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 382aa MW: 41847 Da PI: 8.8402 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 143 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F +++L++H+ + H Vang0615s00090.1 143 FPCTACGEIFQKPHLLETHQTLkH 166 89******************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.432 | 143 | 167 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 145 | 166 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.90.228.10 | 8.7E-6 | 169 | 286 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
SuperFamily | SSF56399 | 1.06E-14 | 170 | 380 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 5.1E-6 | 316 | 380 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MASSIATFFN KFLYLLILLV HLGCFIFTTT AGGKKTPPSK KRKISPSSPS HPKFKTHKAL 60 SSSWHFIKHL LSTKSCKTPK TATSQLSPQS TAPTSTTSVS PAAAHSLISL TQPDPDRKQP 120 GSCPESDISA DTNLFFPLRN DIFPCTACGE IFQKPHLLET HQTLKHAVSD LSGSDPGHNI 180 VQIIFKSGWP ESKPSPTITR ILKIHNSPKI LAKFEEYREV VKSKAARNGS LTRRRDERCI 240 ADGNELMRFH CSTFLCDLGH SGDSSICSQQ FCNICGIIKS GFSPKLDGIA TLSTSWRAHV 300 AIPDDVEREF GFMNVKRAML VCRVIAGRVG SDSDDAEKAD GGFDSVMARS ETGVYTRLDE 360 EELLVFNPRA VLPCFVIVYT V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0615s00090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434956.1 | 0.0 | PREDICTED: uncharacterized protein LOC108341815 | ||||
TrEMBL | A0A0L9VCB6 | 0.0 | A0A0L9VCB6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S698 | 0.0 | A0A0S3S698_PHAAN; Uncharacterized protein | ||||
STRING | XP_007146728.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10668 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-109 | C2H2 family protein |
Publications ? help Back to Top | |||
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