PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g10610.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 1015aa    MW: 112200 Da    PI: 4.6499
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g10610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-1887133148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   Vang05g10610.1  87 KGQWTPEEDETLRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 133
                      799****************************9.************986 PP
2Myb_DNA-binding51.32.7e-16176218145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+  a+ ++ gRt++ +k++w+
   Vang05g10610.1 176 KEAWTQEEELALIRAHQIYGNK-WAELAKILP-GRTDNAIKNHWN 218
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.09382137IPR017930Myb domain
SMARTSM007173.2E-1586135IPR001005SANT/Myb domain
PfamPF002493.5E-1687133IPR001005SANT/Myb domain
SuperFamilySSF466895.64E-2487137IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2088146IPR009057Homeodomain-like
CDDcd001675.67E-1490133No hitNo description
SuperFamilySSF466895.6E-6162200IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-22166225IPR009057Homeodomain-like
PROSITE profilePS5129425.558171225IPR017930Myb domain
SMARTSM007173.0E-16175223IPR001005SANT/Myb domain
PfamPF002491.6E-14176219IPR001005SANT/Myb domain
CDDcd001671.20E-12178218No hitNo description
SuperFamilySSF466895.64E-24193221IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1015 aa     Download sequence    Send to blast
LVVDVHLQIL LRFRSRLDLQ MRTVSTTSSV LYPCWILNLI VGSVLEYEQQ TMEGERTIPA  60
VDGVTDGVQK IRALHGRTTG PTRRSTKGQW TPEEDETLRK AVQRFKGKNW KKIAECFKDR  120
TDVQCLHRWQ KVLNPELVKG PWSKEGMKST FESCHNMYQM VIQDKWHNHL NPTINKEAWT  180
QEEELALIRA HQIYGNKWAE LAKILPGRTD NAIKNHWNSS VKKKLDSYLA SGLLTQLQNV  240
PLAGNPNQPI ASVSSRLQQS GEDNGPRGTE GEEVSQCSQE SANAGYFSSA RDMNSVALRT  300
GEEYRPNEEP SQASCSEPYY VSLDEVTVSL PDMADQEICV EQKYSHNPGN SNNGEGQLDL  360
IDLTNISSLD FGQESSQFQN DCMMNVPFQT SVGLGVATTM QPTSIDSVKP EHMLMSDDEC  420
CRILFSEAIS DGCFSSEDYN KCVNMVDLLE GPSFLYQSSL PSVPSVVSST GDRLMYTAEA  480
NQLVGSEDQQ FVSRTQDNII YASELSSPPC IRRIDNTEMQ EPSDVVKDDS KLVPVNSFGC  540
GSDAKSTSYV HTEQDTGALC YEPPRFPSLD IPFLSCDLIQ SGGDMQQEFS PLGIRQFMMS  600
SMNCLTPFRL WDSPSRDDSP DALLKSAAKT FTSTPSILKK RNRDLLSPLS DKRIDKKLEI  660
EMTSTLIKNF SRLDVMFDDN EAQGADLIPP SSMPKRDSGT SVEDDKENCG QAVKVESVGE  720
KNKHAILDDK KSEKDSGDGS SQEKIKQEPV SVDSAIDNDG SAAEEIVQQP SGVLVEHDVN  780
DLLMYSPDQV NLKSERVLSL SARTKKNPCS RINSPSVWLK EHERLSVAVT CIHSVSSSGP  840
GENSGDHTGN DGGLETCSIF GGTPFRKSIE SPSAWKSPWF INTLLSSPRI DTEITIEDFG  900
YFMSPGDRSY DAIGLMKQIN EQTAAQYASA HEILGNETPK ALPKGKSRND GDEDQEDIDP  960
NNQRGDCSQS ASSALMERRV LDFSECGTPV KGDSSKSSAM SFSSPTSYLL KGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-45872256159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-45872256159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g10610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409213.10.0PREDICTED: myb-related protein 3R-1
RefseqXP_017409214.10.0PREDICTED: myb-related protein 3R-1
RefseqXP_017409215.10.0PREDICTED: myb-related protein 3R-1
TrEMBLA0A0L9TDQ50.0A0A0L9TDQ5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RCI00.0A0A0S3RCI0_PHAAN; Uncharacterized protein
STRINGXP_007137183.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein