PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g10000.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 897aa    MW: 98355.7 Da    PI: 6.9878
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g10000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1875133357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     k  ++t+eq+++Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Vang05g10000.1  75 KYVRYTPEQVDALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 133
                     5679*****************************************************97 PP
2START172.92.1e-542194272205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++a  v+e+l+d++ W ++++ +++l+v s+g  g+++l 
  Vang05g10000.1 219 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPA-RVAEILKDRLSWFRDCRTVDVLNVMSTGngGTIELL 312
                     7899******************************************************.9999999999************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p     +++vRa +lpSg+li+p+++g+s +++v+h+ l+ ++++++lr+l+
  Vang05g10000.1 313 YMQLYAPTTLAPgRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAmppVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLY 407
                     ******************************************99988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++   ++t++a+l+++++
  Vang05g10000.1 408 ESSMLLSQRTTMAALRHLRQ 427
                     ***************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.64570134IPR001356Homeobox domain
SMARTSM003891.2E-1572138IPR001356Homeobox domain
SuperFamilySSF466897.7E-1774137IPR009057Homeodomain-like
CDDcd000861.92E-1675135No hitNo description
PfamPF000463.8E-1676133IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1877133IPR009057Homeodomain-like
CDDcd146864.40E-6127166No hitNo description
PROSITE profilePS5084823.893209437IPR002913START domain
CDDcd088757.31E-76213428No hitNo description
Gene3DG3DSA:3.30.530.209.4E-20218424IPR023393START-like domain
SuperFamilySSF559617.55E-35218429No hitNo description
SMARTSM002345.7E-40218428IPR002913START domain
PfamPF018521.2E-51219427IPR002913START domain
PfamPF086701.3E-50755895IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
LSSTSFKFLL SFSLSLSSHS CPTPTHLKPP LLINEASSFL LFLSFKPINT INREGMMAVS  60
SACKDGSKVA MDNGKYVRYT PEQVDALERL YHECPKPSSL RRQQLIRECP ILSNIEPKQI  120
KVWFQNRRCR EKQRKEASRL QGVNRKLTAM NKLLMEENDR LQKQVSQLVY ENSFFRQQTQ  180
NATVATTDTS CESVVTSGQR HLTPQHPPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ  240
MPGMKPGPDS IGIVAISHGC PGVAARACGL VGLEPARVAE ILKDRLSWFR DCRTVDVLNV  300
MSTGNGGTIE LLYMQLYAPT TLAPGRDFWL LRYTSLLEDG SLVVCERSLN NTQNGPAMPP  360
VQHFVRADML PSGYLIRPCE GGGSIIHIVD HMVLEPWSVP EVLRPLYESS MLLSQRTTMA  420
ALRHLRQISQ EVSQPSVTGW GRRPAALRAL SQRLSKGFNE AVNGFADDGW SMLESDGIDD  480
VTLLVNSSPS KMMGANLGYN TNGFPSMSSS VLCAKASMLL QNVPPAILLR FLREHRSEWA  540
XXXIDAXSAA AIKAGPCSLP GARPGGGFGG QFMEVIKLEN MGYYRDDMTI PGDVFLLQNT  600
ANRPECRNCS QLCSGVDEHA VGTSAELVFA PIDASFSDDA PILPSGFRII PLDSSSDAAS  660
PNRTLDLASA LEVGTTANKA AGDNAGHSGS TKSVMTIAFQ FAFEVHLQEN IATMARQYVR  720
SIIASVQRVS LALSPSRFGS HNAFHLPPGT PEAQTLARWI SNSYRFYLGV ELLKCEGSES  780
ILKPLWHHSD AILCCSLKAL PVFTFANQAG LDMLETTLVA LQDITLEKIF DDNGKKTLCS  840
EFPQIMQQGF MCIQGGICLS SMGRPVSYER AVAWKVLNEE ESAHCICFMF INWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g10000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022636494.10.0homeobox-leucine zipper protein ATHB-8 isoform X1
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A3Q0F1N00.0A0A3Q0F1N0_VIGRR; homeobox-leucine zipper protein ATHB-8 isoform X1
STRINGXP_007137231.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]