PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g09360.1 | ||||||||
Common Name | LR48_Vigan04g223700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 175aa MW: 19293.7 Da PI: 7.3719 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Vang05g09360.1 87 FSCNYCQRKFYSSQALGGHQNAH 109 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.08E-6 | 84 | 115 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 85 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.427 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
METLSYQAPC DSLSVGVTPA SPSKPLQNPQ KKLEEEEEGE KEKKGDTLLD LNVPGDDSAT 60 GCSPVLNLIT CLEADLSSED PHEPRVFSCN YCQRKFYSSQ ALGGHQNAHK RERSIAKKRK 120 LTMESCRKTS RDKVDRLQLK SAGNEEISEY LVSGNTGLKT GQEKKKHLDL SLKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g09360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421419.1 | 4e-69 | PREDICTED: zinc finger protein 1-like | ||||
Swissprot | Q39261 | 4e-20 | ZFP2_ARATH; Zinc finger protein 2 | ||||
TrEMBL | A0A0L9UHM8 | 8e-68 | A0A0L9UHM8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RC82 | 8e-68 | A0A0S3RC82_PHAAN; Uncharacterized protein | ||||
STRING | XP_007136968.1 | 4e-53 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9619 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 2e-22 | zinc finger protein 2 |
Publications ? help Back to Top | |||
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