PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g09240.1
Common NameLR48_Vigan04g223400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 193aa    MW: 22269.3 Da    PI: 9.4712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g09240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18754253
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                    +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  Vang05g09240.1  7 RYRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54
                    69******9.**********8.....556*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.50E-34666No hitNo description
PfamPF008471.1E-11755IPR001471AP2/ERF domain
SMARTSM003801.7E-41770IPR001471AP2/ERF domain
PROSITE profilePS5103221.14764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-34764IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-21766IPR016177DNA-binding domain
PRINTSPR003673.1E-11819IPR001471AP2/ERF domain
PRINTSPR003673.1E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MARSQQRYRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGTRAR  60
TNFPYNPNAS QSSSSKLLSA TLTAKLHRCY MASLQMTRPS SLPEPQRVAS PNVITSASNF  120
SVKSNETKTM LPQKREQEEQ EVEENWVLKK VKVERTQQFK PLEEDHIEQM IEELLHYGTV  180
ELCSVIPHHR LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18871670ATERF1
3gcc_A2e-18871670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for all lupin cells independent of the respective tissue.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g09240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421391.11e-143PREDICTED: protein PPLZ02-like
SwissprotP161462e-82PZ02_LUPPO; Protein PPLZ02
TrEMBLA0A0L9UH881e-141A0A0L9UH88_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RBR51e-141A0A0S3RBR5_PHAAN; Uncharacterized protein
STRINGXP_007136971.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-57ERF family protein
Publications ? help Back to Top
  1. Perrey R,Warskulat U,Wink M
    Molecular cloning of a lupin-specific gene from a cDNA library of suspension-cultured cells of Lupinus polyphyllus.
    Plant Mol. Biol., 1990. 15(1): p. 175-6
    [PMID:2103434]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]