PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g07510.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 203aa    MW: 23415.5 Da    PI: 5.2003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g07510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.9e-12125170655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +Av Y+k Lq
  Vang05g07510.1 125 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVAYVKLLQ 170
                     689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.24119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-14122177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-10123174No hitNo description
Gene3DG3DSA:4.10.280.105.9E-14124177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9125175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-9125170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MQPKSAARLP SFRSIPASWL ESVLLKEEEE QEEEEEEQEE IQQAEEEPLT FTQLLSTIAA  60
PSPSQRYDTQ DYPPTTMSMS IPNSIAPKEL YASAPHLKVD NMFTFEDSVP CRVRAKRGCA  120
THPRSIAERV RRTRISDRIR KLQELVPNMD KQTNTADMLD EAVAYVKLLQ KQIEYVDDNL  180
SLPLRFRLTN FHELRLLKHC RN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g07510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-146AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433268.11e-124PREDICTED: transcription factor bHLH122-like isoform X1
TrEMBLA0A0S3SEX11e-122A0A0S3SEX1_PHAAN; Uncharacterized protein
STRINGXP_007131294.12e-77(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.15e-31bHLH family protein