PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g07430.1
Common NameLR48_Vigan08g213800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 176aa    MW: 19517.7 Da    PI: 7.7824
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g07430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-162573355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr ++ +gr+v+eIr p   g+++r++lg+f ++e+Aa+a++ a+  l+g
  Vang05g07430.1 25 FRGVRKRS-WGRYVSEIRLP---GQKTRIWLGSFASPEMAARAYDSAAFFLKG 73
                    8****888.**********8...557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.5E-322487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-282482IPR001471AP2/ERF domain
PROSITE profilePS5103220.6662481IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-192482IPR016177DNA-binding domain
PRINTSPR003677.3E-112536IPR001471AP2/ERF domain
PfamPF008477.2E-102573IPR001471AP2/ERF domain
CDDcd000182.99E-272583No hitNo description
PRINTSPR003677.3E-116383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSISEEEGKG GSRKRRREAE AETAFRGVRK RSWGRYVSEI RLPGQKTRIW LGSFASPEMA  60
ARAYDSAAFF LKGTSATLNF PDLVHSLPRP LSSSRRDIQS AAATAALHPP SLGTDTNSNS  120
SSWLDNLGDE SRISTMSFED VKDAPLMSPL RVDLTFGDFS WNNLFHFNYD DVFMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-152586668ATERF1
3gcc_A4e-152586668ATERF1
5wx9_A2e-1425811572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11216RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g07430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432122.11e-125PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD33e-32DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0L9V8B81e-124A0A0L9V8B8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SEW21e-124A0A0S3SEW2_PHAAN; Uncharacterized protein
STRINGGLYMA09G36840.26e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.19e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]