PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang05g07370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 269aa MW: 30478.8 Da PI: 6.2308 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.6 | 2.1e-18 | 8 | 59 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...k 50 +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL+ Vang05g07370.1 8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-DVIREVDLNKMEPWDLQDgwvV 59 69****************************.99**************843441 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-17 | 7 | 57 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.609 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-8 | 9 | 61 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 269 aa Download sequence Send to blast |
MASSNGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMDVI REVDLNKMEP WDLQDGWVVC 60 RVFKKKNLFK IGNEGGSTHN PDQQMNNSSS TNGRSFIHRE NHYLLHQHQN HRNSPGLELD 120 KPELALHYPH LQNPQYSLFQ SQNLLQTQKP MVFDYSYASS LPSDTPVMAK QLMGNPRECE 180 SGSEGLRYQV SESGIEVGSC EPNQEVGGGR GEGINEWGVL DRLVTSHLGN EESNKGVRFE 240 ETNPQSVHQI NQLSLRGEMD FWAYGGKQ* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang05g07370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432862.1 | 1e-157 | PREDICTED: protein BEARSKIN2-like | ||||
Swissprot | Q9SV87 | 3e-38 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A0L9V9I3 | 1e-155 | A0A0L9V9I3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SEU2 | 1e-155 | A0A0S3SEU2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007131322.1 | 1e-133 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8752 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G10350.1 | 3e-36 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
---|---|---|---|
|