PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g07370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 269aa    MW: 30478.8 Da    PI: 6.2308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g07370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.62.1e-18859150
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...k 50
                    +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL+     
  Vang05g07370.1  8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-DVIREVDLNKMEPWDLQDgwvV 59
                    69****************************.99**************843441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-17757IPR003441NAC domain
PROSITE profilePS5100514.6098159IPR003441NAC domain
PfamPF023651.8E-8961IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MASSNGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMDVI REVDLNKMEP WDLQDGWVVC  60
RVFKKKNLFK IGNEGGSTHN PDQQMNNSSS TNGRSFIHRE NHYLLHQHQN HRNSPGLELD  120
KPELALHYPH LQNPQYSLFQ SQNLLQTQKP MVFDYSYASS LPSDTPVMAK QLMGNPRECE  180
SGSEGLRYQV SESGIEVGSC EPNQEVGGGR GEGINEWGVL DRLVTSHLGN EESNKGVRFE  240
ETNPQSVHQI NQLSLRGEMD FWAYGGKQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g07370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432862.11e-157PREDICTED: protein BEARSKIN2-like
SwissprotQ9SV873e-38BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A0L9V9I31e-155A0A0L9V9I3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SEU21e-155A0A0S3SEU2_PHAAN; Uncharacterized protein
STRINGXP_007131322.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.13e-36NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]