PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g07280.1
Common NameLR48_Vigan08g211800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 372aa    MW: 42863.9 Da    PI: 5.9071
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g07280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.22.7e-56151441129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  Vang05g07280.1  15 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-DVIKDVDLYKIEPWDLQEicRIGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 108
                     69****************************.9***************954555442556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +s k+el+g++ktLvfykgrap+g+k+dW+mheyrle
  Vang05g07280.1 109 YS-KHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 144
                     **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-6112168IPR003441NAC domain
PROSITE profilePS5100560.41315168IPR003441NAC domain
PfamPF023657.0E-2916143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
LQESAEENME SFTHVPPGFR FHPTDEELVD YYLRKKVASR RIDLDVIKDV DLYKIEPWDL  60
QEICRIGTEE QNEWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKAIYS KHELIGMRKT  120
LVFYKGRAPN GQKSDWIMHE YRLETEENGT PQASSQEEGW VVCRVFKKRV TTMRKVNEHD  180
SPSWYDEQVS FIQDMDSPKQ TSQSNLVYQL PYPCKKELDV PYQMPRDHFL PLLESPKLLQ  240
SASAITPNPM APYLLDHVNH STTLLPSLLI QEEHVIGQQI NLQTTYDNSN CNDQAVDQVT  300
DWRVLDKFVA SQLSQDGSKE NAYSNTSASI FHGIDSGNCN VQFRHFDKHE MVVPQENAST  360
SNSSCPIALW K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5261696169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g07280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432538.10.0PREDICTED: NAC domain-containing protein 7
RefseqXP_017432539.10.0PREDICTED: NAC domain-containing protein 7
SwissprotQ9FWX21e-134NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0L9V8990.0A0A0L9V899_PHAAN; Uncharacterized protein
STRINGXP_007131341.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-126NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]