PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g07050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARR-B | ||||||||
Protein Properties | Length: 785aa MW: 88410.6 Da PI: 6.2821 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.1 | 1.2e-25 | 179 | 232 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt++LH +Fv+av+qL G e+A+P +i +lm+ + Lt++hv+SHLQkYR Vang05g07050.1 179 KPRVVWTTDLHGKFVKAVNQL-GLENAVPNKIQQLMNTPHLTRNHVASHLQKYRN 232 79*******************.********************************5 PP | |||||||
2 | G2-like | 44 | 5.1e-14 | 505 | 558 | 1 | 52 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse...kAtPktilelmkvkgLtlehvkSHLQk 52 kpr++W ++L ++Fv+av +G +e AtPk++le+m+ + L ++h++SHLQk Vang05g07050.1 505 KPRVVWDQKLNASFVSAVLIIG-IEsmiDATPKKVLEVMNDPRLERTHIASHLQK 558 79*******************6.442336*************************8 PP | |||||||
3 | Response_reg | 54.7 | 5.7e-19 | 20 | 128 | 1 | 110 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl +d +p+v+e +++++++ ye+++ +++ ++a+ l ++k +Dlil+ + mp+mdG+e+l ++++e ++p ++++ ++++ + + +k+Ga Vang05g07050.1 20 VLAIDTDPIVLEFIKKVCNEYCYEVITCTESLSAAIILQEKKStIDLILMEVHMPHMDGYEFL--LTTQEINVPKLMMSFDDSKKSVMKTIKLGA 112 7899*******************888888888888766644446******************8..5666677*******9999************ PP SEEEESS--HHHHHHH CS Response_reg 95 kdflsKpfdpeelvka 110 d+ Kp ++++l+++ Vang05g07050.1 113 CDYMIKPLHEDRLRNM 128 ************9975 PP | |||||||
4 | Response_reg | 62.7 | 1.8e-21 | 331 | 432 | 3 | 103 |
EESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 3 ivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 +d + +v+e +++ ++++g+ +v +++++++a++ l++++ +Dlil+ ++mp m+G+e+l+ i++e+ ++p i++++ ++ + + +a++ Ga Vang05g07050.1 331 AIDTNLTVLEFIKNTCNHDGI-QVLACSESQSAVNALRKRKqrIDLILVEVDMPIMNGYEFLEFIKKEQVDVPLIMMSSDNSRASVMRAMEHGAY 424 5788999**************.9999***********776667**************************************************** PP EEEESS-- CS Response_reg 96 dflsKpfd 103 d+ +Kp + Vang05g07050.1 425 DYWVKPLQ 432 ******75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.12E-24 | 16 | 145 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.1E-26 | 17 | 149 | No hit | No description |
SMART | SM00448 | 5.3E-12 | 18 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 30.548 | 19 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.2E-16 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.70E-17 | 21 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 176 | 235 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.24E-17 | 177 | 235 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.4E-22 | 179 | 232 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-7 | 181 | 231 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF52172 | 4.27E-24 | 326 | 444 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.5E-25 | 327 | 451 | No hit | No description |
SMART | SM00448 | 8.4E-18 | 327 | 438 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 29.866 | 328 | 444 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.5E-18 | 329 | 433 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.69E-21 | 332 | 443 | No hit | No description |
SuperFamily | SSF46689 | 1.25E-6 | 503 | 559 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-15 | 503 | 558 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-13 | 505 | 558 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 785 aa Download sequence Send to blast |
MGKISSEKKV FSEYPSNLKV LAIDTDPIVL EFIKKVCNEY CYEVITCTES LSAAIILQEK 60 KSTIDLILME VHMPHMDGYE FLLTTQEINV PKLMMSFDDS KKSVMKTIKL GACDYMIKPL 120 HEDRLRNMWT HVVRKSMNED KMRKNIRNSL EDDNQNSRFV FSSSDEISRE VGNAGQSKKP 180 RVVWTTDLHG KFVKAVNQLG LENAVPNKIQ QLMNTPHLTR NHVASHLQKY RNVLKEKARR 240 EKERQPEPKR EQQSVPDIQM DNHHAEEAFG FALSDPVAIY PTIAIPQNFP QTLDSECGVW 300 LHCKAMAKFG SPATHIEDTV PQVPSALTIV AIDTNLTVLE FIKNTCNHDG IQVLACSESQ 360 SAVNALRKRK QRIDLILVEV DMPIMNGYEF LEFIKKEQVD VPLIMMSSDN SRASVMRAME 420 HGAYDYWVKP LQEFNFTIMR ARVFQKKCMI ADKLQKDSGC LKDDDKRRGR SDNSELASCM 480 VHRSNSNFEE ADVVDESCNP SPTKKPRVVW DQKLNASFVS AVLIIGIESM IDATPKKVLE 540 VMNDPRLERT HIASHLQKDM SLPRTSALQP CSATATTNFH PGFTGNMEEE ALAHGHPLAA 600 FPNVVIPENF SEEQSNINRL LSNNFNAEQV LAHDHPSAIF PNIASNLISQ PGTLDDASIY 660 GLLTPSDTPL FVNPTILQID TMQQPMNHNQ MYPMNFQPSF TMISGNPAFA SQNYNFGMNM 720 GHGSQSIQDG NSIGEGILDQ YSTIDSIYHP EFQNAGLPSG AVRRFAASDY RSQNPYIDGN 780 LYQQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 8e-17 | 178 | 236 | 4 | 62 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g07050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432118.1 | 0.0 | PREDICTED: two-component response regulator ARR14-like | ||||
TrEMBL | A0A0S3SER2 | 0.0 | A0A0S3SER2_PHAAN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20693 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 2e-51 | response regulator 2 |