PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g06300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRF | ||||||||
Protein Properties | Length: 356aa MW: 39622.7 Da PI: 6.6471 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.3 | 7.5e-25 | 103 | 147 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Vang05g06300.1 103 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVES 147 79****************************************986 PP | |||||||
2 | QLQ | 61.7 | 1.9e-21 | 20 | 56 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+++L++Q+l++Ky++a++PvP++L+++iqk Vang05g06300.1 20 SPFTVSQWEELEHQALIFKYMLAGLPVPQNLVLPIQK 56 89*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.5E-12 | 20 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.3E-15 | 21 | 55 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.13 | 21 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 103 | 147 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.3E-21 | 104 | 146 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MNNSGGGTLM GLSNGYYGRS PFTVSQWEEL EHQALIFKYM LAGLPVPQNL VLPIQKSFNS 60 IPHAFFHHPT CQFSNPVSFL SGDFEPISYV KLSYCSFYGK KVDPEPGRCR RTDGKKWRCS 120 KEAYPDSKYC ERHMHRGRNR SRKPVESQTM TQSSSTVTTL DVTGGSGSSR TVNFQNLPAN 180 AVGNLQGTDS GTDHTSYHLD SIPYAIPSKE YRYLQGLKSE GGEHIFFSEA SGSSKVLQME 240 SQQLEDTWSL MSNKVASFST SKSSNDSLLH SDYPQNSFLS GEYASEEHLK EEGQSLRPFF 300 NEWPKGRDSW SGLEDERSNQ AAFSTTQLSI SIPMSSDISA TSSQSPHGEN EIQFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g06300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017431539.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X1 | ||||
TrEMBL | A0A0L9V8F9 | 0.0 | A0A0L9V8F9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SEF4 | 0.0 | A0A0S3SEF4_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA11G11826.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4781 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-42 | growth-regulating factor 5 |