PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g04200.1
Common NameLR48_Vigan04g235300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 377aa    MW: 42242.1 Da    PI: 4.7657
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g04200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19e-36451362102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++++ed+++++++sws+  nsfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++
  Vang05g04200.1  45 FLTKTFDVVEDPSTNDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLAGQRHLLKT 130
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  Vang05g04200.1 131 IKRRRH 136
                     ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3741134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-3341134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-6041134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-194568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3145134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKGGTVKEEE TFAFAAAAPS SPSSSTSNLF PQPREGLHDV GPPPFLTKTF DVVEDPSTND  60
IVSWSRARNS FVVWDSHKFS TTILPRYFKH NNFSSFVRQL NTYGFRKVDP DKWEFANEGF  120
LAGQRHLLKT IKRRRHVTQM QSHEGGSGAC VELGEFGLEG EIERLRRDRT VLMAEIVKLR  180
QQQHNSREQL LSMESRLQVS EKKHQQMMTF LAKALDNQTF IQQFLHRNAQ KKELQGGRRK  240
RRLTASPSVE NLQQDPVIDA ALPVEEESTN IESHMESLLS AVCDDDPLES SSELEDPILG  300
SVPTTGGGSD LGVVSDAIWE DLLNQDLVAA NHEEEVVIGD FSQVDVPVED LVADPDEWSE  360
DLQNLVDHMG YLASKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-254313427129Heat shock factor protein 1
5d5v_B7e-254313427129Heat shock factor protein 1
5d5v_D7e-254313427129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133LKTIKRR
2163168RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g04200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420831.10.0PREDICTED: heat shock factor protein HSF30-like
SwissprotP411521e-124HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0L9UGY30.0A0A0L9UGY3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RBD40.0A0A0S3RBD4_PHAAN; Uncharacterized protein
STRINGXP_007136834.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-109heat shock transcription factor A2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]