PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g04170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 189aa MW: 21332.2 Da PI: 9.5945 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.4 | 1.1e-19 | 63 | 96 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk + Vang05g04170.1 63 CADCNTTSTPLWRSGPNGPKSLCNACGIRQRKAR 96 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.8E-17 | 57 | 110 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.56E-13 | 58 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.0E-16 | 61 | 96 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.809 | 61 | 93 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.26E-13 | 62 | 99 | No hit | No description |
Pfam | PF00320 | 2.4E-17 | 63 | 96 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 63 | 88 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MADPNSSSCG HLAEEEIEEQ ENRRGNYEYE KWLSSNVRLT RKMMSPPSNN LATNKAFDII 60 RVCADCNTTS TPLWRSGPNG PKSLCNACGI RQRKARRAMA EAANSCMDAK SRVRHQKEKK 120 CRRNHFAGFK NKSKTDRGTL SEEQKVRIHL KDFSVSLRDD SALKQESPMD EVAQAAMLLM 180 DLSRGFLY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g04170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421380.1 | 1e-140 | PREDICTED: putative GATA transcription factor 22 | ||||
TrEMBL | A0A0S3RBT9 | 1e-138 | A0A0S3RBT9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007136825.1 | 5e-93 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 2e-21 | GATA transcription factor 16 |