PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang05g03830.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 506aa MW: 57239.4 Da PI: 5.2939

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang05g03830.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	48.5	1.8e-15	404	452	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++dls +F+l+i+dAA +L+v+ +v+K+i R ++kRWP+Rk++sl Vang05g03830.1 404 KMTMNDLSPFFHLTIRDAADKLEVSDSVVKKISRLGNLKRWPQRKLQSL 452 689*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.39	392	473	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-15	404	452	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MDNNCNNYSD SFHSPLIGNY IEPDPALIYI LNDQPNVQQR NAQQNDPFVV EQDHVSFTGL 60 TIQDVSTHSD NDFTIGGVPN LENGGWSTRK RKFPYMDSMI EGHPVHGDNT FPNELQFWPP 120 GPFDIDIDAS FDPFLHNLID RDISIFDLSN DELIAPSSQQ NALPQHQHAV PGQQNALCKQ 180 PNAPPQNQNL YPFGLEQIHV PILNPTFQDQ SLHVNYNFAT GEVPNIDMEG PSRRKVKQPM 240 AEHPLLKHGI LNEEDVPVRF SSSFSFSLNF KHSAGFKFEK LEIHGSLGVI GHAIFHVQDM 300 TPGGEPPREV YQMIKQLLYL SLLTFIFSGI TSFGLKSIEQ IRSFLVAYCK DQTRLGFVTL 360 DDPLSAYYDT ICTGLDWAEH NDGDDDLSPR WSSSLNSQRK RVPKMTMNDL SPFFHLTIRD 420 AADKLEVSDS VVKKISRLGN LKRWPQRKLQ SLAKDVRVLR KALDSPYEGT RQRVRQEIQR 480 LQLEMVAICG GVTPTGIEII QFEEE*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MDNNCNNYSD SFHSPLIGNY IEPDPALIYI LNDQPNVQQR NAQQNDPFVV EQDHVSFTGL  60
TIQDVSTHSD NDFTIGGVPN LENGGWSTRK RKFPYMDSMI EGHPVHGDNT FPNELQFWPP  120
GPFDIDIDAS FDPFLHNLID RDISIFDLSN DELIAPSSQQ NALPQHQHAV PGQQNALCKQ  180
PNAPPQNQNL YPFGLEQIHV PILNPTFQDQ SLHVNYNFAT GEVPNIDMEG PSRRKVKQPM  240
AEHPLLKHGI LNEEDVPVRF SSSFSFSLNF KHSAGFKFEK LEIHGSLGVI GHAIFHVQDM  300
TPGGEPPREV YQMIKQLLYL SLLTFIFSGI TSFGLKSIEQ IRSFLVAYCK DQTRLGFVTL  360
DDPLSAYYDT ICTGLDWAEH NDGDDDLSPR WSSSLNSQRK RVPKMTMNDL SPFFHLTIRD  420
AADKLEVSDS VVKKISRLGN LKRWPQRKLQ SLAKDVRVLR KALDSPYEGT RQRVRQEIQR  480
LQLEMVAICG GVTPTGIEII QFEEE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang05g03830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007136870.1	0.0	hypothetical protein PHAVU_009G080800g
TrEMBL	A0A4D6NWT2	0.0	A0A4D6NWT2_VIGUN; Uncharacterized protein
STRING	XP_007136870.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	5e-07	RWP-RK domain-containing protein