PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g02710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 269aa MW: 29862 Da PI: 10.5737 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 133.5 | 4.6e-41 | 8 | 206 | 1 | 187 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 mdd g+re r+k+ +y++a + l +++ +q+m+++aerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erdn++++l+++e Vang05g02710.1 8 MDDAGHREngRHKAdQYKSAqgQWLMQHQpsMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYRE 102 9*****999*****9***655544444432146************************************************************** PP GAGA_bind 89 nsla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177 +s+ s++p+g+q+++g+k+i++ qq +++ p+++d+++ +re+++++alp aa+ ++e+ k+ +rak+pke+k+++++kk++k kk Vang05g02710.1 103 TSIGsgsmSSCPPGCQISRGVKHIHHPQQqVHHiPNMGDPSYSTREMHTTDALP---AAPITSEAGKS---RRAKRPKEPKSTSPNKKTPKAAKK 191 *98788889******************9955669******************99...44555555444...478899999999999999999999 PP GAGA_bind 178 vkkesader.....s 187 vkkes+d + + Vang05g02710.1 192 VKKESEDLNkvmfgK 206 999998844244444 PP | |||||||
2 | GAGA_bind | 48.5 | 3.6e-15 | 213 | 247 | 247 | 281 |
GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281 ++++r+aR++grKmS++af+klL++Laae y +s Vang05g02710.1 213 VPNKRHARVGGRKMSGSAFNKLLSRLAAEDYKFSA 247 79*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 9.9E-26 | 8 | 211 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 1.3E-63 | 8 | 251 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 8.8E-13 | 213 | 247 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
LQPVVFLMDD AGHRENGRHK ADQYKSAQGQ WLMQHQPSMK QIMAIMAERD AAIQERNLAI 60 SEKKAAYAER DMAFLQRDAA IAERNNAILE RDNAIATLQY RETSIGSGSM SSCPPGCQIS 120 RGVKHIHHPQ QQVHHIPNMG DPSYSTREMH TTDALPAAPI TSEAGKSRRA KRPKEPKSTS 180 PNKKTPKAAK KVKKESEDLN KVMFGKAHEW KNVPNKRHAR VGGRKMSGSA FNKLLSRLAA 240 EDYKFSAATT SARDNYKTIV LVVHSTTV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g02710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017436624.1 | 1e-150 | PREDICTED: protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_017436625.1 | 1e-150 | PREDICTED: protein BASIC PENTACYSTEINE6 | ||||
Swissprot | Q8L999 | 2e-79 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A0L9V970 | 1e-149 | A0A0L9V970_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RAS6 | 1e-149 | A0A0S3RAS6_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA04G02860.1 | 1e-138 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 3e-59 | basic pentacysteine 6 |