PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g02650.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 281aa    MW: 32302.8 Da    PI: 8.8102
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g02650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41.1e-2962112151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s
  Vang05g02650.1  62 KRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 112
                     79***********************************************86 PP
2K-box873.7e-29124222199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq + g++l+++++e++q++l+kLk+ ++nL++e+R+++G++L +L++++L+ Le++++k+ k +R++K++++++qi++++kk ++ +e +++L 
  Vang05g02650.1 124 YQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLKLLEDEMDKAAKIVRERKYKVITNQIDTQRKKFNNEKEVHNRLL 218
                     67788999*************************************************************************************99 PP

           K-box  96 kkle 99 
                     + l+
  Vang05g02650.1 219 RDLD 222
                     8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.40854114IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-4154113IPR002100Transcription factor, MADS-box
CDDcd002651.31E-3755133No hitNo description
SuperFamilySSF554551.83E-3656148IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-295676IPR002100Transcription factor, MADS-box
PROSITE patternPS00350056110IPR002100Transcription factor, MADS-box
PfamPF003192.1E-2563110IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-297691IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-2991112IPR002100Transcription factor, MADS-box
PfamPF014864.1E-17135220IPR002487Transcription factor, K-box
PROSITE profilePS5129714.233137227IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MHLPPPSLCI SLSLINSLSY SCSYYHSEFP EEADRKEQKH KHKEAEADTA TTAMARGKIQ  60
IKRIENTTNR QVTYSKRRNG LFKKANELTV LCDAKVSIIM FSSTGKLHEY ISPSTSTKHF  120
FDQYQMTLGV DLWNSHYENM QENLKKLKEV NKNLRKEIRQ RMGDCLIDLN MEDLKLLEDE  180
MDKAAKIVRE RKYKVITNQI DTQRKKFNNE KEVHNRLLRD LDARAEDPRF ALIENAGGEY  240
DSVIGFSNLG PRMFALSLQP SHPSAHSGPT SDLTTYPLLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-1554112159MEF2C
5f28_B1e-1554112159MEF2C
5f28_C1e-1554112159MEF2C
5f28_D1e-1554112159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g02650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3103030.0AY310303.1 Glycine max MADS-box protein GmNMH7 (NMH7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435663.10.0PREDICTED: floral homeotic protein DEFICIENS
SwissprotP237061e-107DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A0S3RAE80.0A0A0S3RAE8_PHAAN; Uncharacterized protein
STRINGGLYMA06G02990.11e-156(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]