PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang05g02650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 281aa MW: 32302.8 Da PI: 8.8102 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.4 | 1.1e-29 | 62 | 112 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s Vang05g02650.1 62 KRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 112 79***********************************************86 PP | |||||||
2 | K-box | 87 | 3.7e-29 | 124 | 222 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq + g++l+++++e++q++l+kLk+ ++nL++e+R+++G++L +L++++L+ Le++++k+ k +R++K++++++qi++++kk ++ +e +++L Vang05g02650.1 124 YQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLKLLEDEMDKAAKIVRERKYKVITNQIDTQRKKFNNEKEVHNRLL 218 67788999*************************************************************************************99 PP K-box 96 kkle 99 + l+ Vang05g02650.1 219 RDLD 222 8875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.408 | 54 | 114 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-41 | 54 | 113 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.31E-37 | 55 | 133 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-36 | 56 | 148 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-29 | 56 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 56 | 110 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-25 | 63 | 110 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-29 | 76 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-29 | 91 | 112 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.1E-17 | 135 | 220 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.233 | 137 | 227 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MHLPPPSLCI SLSLINSLSY SCSYYHSEFP EEADRKEQKH KHKEAEADTA TTAMARGKIQ 60 IKRIENTTNR QVTYSKRRNG LFKKANELTV LCDAKVSIIM FSSTGKLHEY ISPSTSTKHF 120 FDQYQMTLGV DLWNSHYENM QENLKKLKEV NKNLRKEIRQ RMGDCLIDLN MEDLKLLEDE 180 MDKAAKIVRE RKYKVITNQI DTQRKKFNNE KEVHNRLLRD LDARAEDPRF ALIENAGGEY 240 DSVIGFSNLG PRMFALSLQP SHPSAHSGPT SDLTTYPLLF * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-15 | 54 | 112 | 1 | 59 | MEF2C |
5f28_B | 1e-15 | 54 | 112 | 1 | 59 | MEF2C |
5f28_C | 1e-15 | 54 | 112 | 1 | 59 | MEF2C |
5f28_D | 1e-15 | 54 | 112 | 1 | 59 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang05g02650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY310303 | 0.0 | AY310303.1 Glycine max MADS-box protein GmNMH7 (NMH7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435663.1 | 0.0 | PREDICTED: floral homeotic protein DEFICIENS | ||||
Swissprot | P23706 | 1e-107 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A0S3RAE8 | 0.0 | A0A0S3RAE8_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA06G02990.1 | 1e-156 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 3e-81 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|